Transcript: Mouse XM_006538628.3

PREDICTED: Mus musculus opioid receptor, delta 1 (Oprd1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Oprd1 (18386)
Length:
7082
CDS:
253..1224

Additional Resources:

NCBI RefSeq record:
XM_006538628.3
NBCI Gene record:
Oprd1 (18386)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006538628.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231351 GCAACGTGCTCGTCATGTTTG pLKO_005 59 5UTR 100% 10.800 15.120 N LOC100044222 n/a
2 TRCN0000027842 GCTCTCCATTGACTACTACAA pLKO.1 477 CDS 100% 4.950 6.930 N Oprd1 n/a
3 TRCN0000027797 CGTGCTCGTCATGTTTGGCAT pLKO.1 63 5UTR 100% 2.640 3.696 N Oprd1 n/a
4 TRCN0000231355 CCAACAGCCTGGGCAATTTAG pLKO_005 1901 3UTR 100% 13.200 9.240 N LOC100044222 n/a
5 TRCN0000009263 GCCCATCCACATCTTCGTCAT pLKO.1 930 CDS 100% 4.050 2.835 N OPRD1 n/a
6 TRCN0000027801 TGTGACCAAGATCTGCGTGTT pLKO.1 738 CDS 100% 4.050 2.835 N Oprd1 n/a
7 TRCN0000009264 CGAGAACTTCAAGCGCTGCTT pLKO.1 1071 CDS 100% 2.640 1.848 N OPRD1 n/a
8 TRCN0000231354 CCAAGGCCAAGCTGATCAATA pLKO_005 593 CDS 100% 13.200 7.920 N LOC100044222 n/a
9 TRCN0000231353 ATGAGCGTGGACCGCTACATT pLKO_005 529 CDS 100% 5.625 3.375 N LOC100044222 n/a
10 TRCN0000181017 GCACATGCCTTTAATCCCAAT pLKO.1 2474 3UTR 100% 4.050 2.025 Y Map6d1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006538628.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488372 CGGTCTATTACGCCGAACGGGTTC pLX_317 28.2% 75.7% 73% V5 (not translated due to prior stop codon) (many diffs) n/a
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