Transcript: Human XM_006711977.3

PREDICTED: Homo sapiens FOS like 2, AP-1 transcription factor subunit (FOSL2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FOSL2 (2355)
Length:
7711
CDS:
1933..2847

Additional Resources:

NCBI RefSeq record:
XM_006711977.3
NBCI Gene record:
FOSL2 (2355)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006711977.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000016138 GCAGTGAGTATTGGAAGACTT pLKO.1 3000 3UTR 100% 4.950 3.465 N FOSL2 n/a
2 TRCN0000329710 GCAGTGAGTATTGGAAGACTT pLKO_005 3000 3UTR 100% 4.950 3.465 N FOSL2 n/a
3 TRCN0000016141 CACCTCCATGTCCAACCCATA pLKO.1 2022 CDS 100% 4.050 2.835 N FOSL2 n/a
4 TRCN0000016142 CACGGCCCAGTGTGCAAGATT pLKO.1 2425 CDS 100% 1.875 1.313 N FOSL2 n/a
5 TRCN0000329767 CACGGCCCAGTGTGCAAGATT pLKO_005 2425 CDS 100% 1.875 1.313 N FOSL2 n/a
6 TRCN0000016140 GCGCTCTGTCATCAAGCCCAT pLKO.1 2592 CDS 100% 0.720 0.504 N FOSL2 n/a
7 TRCN0000353569 GCGCTCTGTCATCAAGCCCAT pLKO_005 2592 CDS 100% 0.720 0.504 N FOSL2 n/a
8 TRCN0000263186 GTGATCACCTCCATGTCCAAT pLKO_005 2017 CDS 100% 4.950 3.960 N Fosl2 n/a
9 TRCN0000225639 TGATCACCTCCATGTCCAATC pLKO_005 2018 CDS 100% 6.000 4.200 N LOC634417 n/a
10 TRCN0000282515 GTCATCAAGCCCATCAGCATC pLKO_005 2599 CDS 100% 4.050 2.835 N Fosl2 n/a
11 TRCN0000240238 TCAGATTTCAAGCTGTGTTTG pLKO_005 5179 3UTR 100% 10.800 6.480 N Ssxb6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006711977.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00587 pDONR223 100% 83.6% 83.6% None 0_1ins117;345_395del n/a
2 ccsbBroad304_00587 pLX_304 0% 83.6% 83.6% V5 0_1ins117;345_395del n/a
3 TRCN0000472210 TTCATCCTCTCAACCTCCAGTACC pLX_317 47.7% 83.6% 83.6% V5 0_1ins117;345_395del n/a
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