Construct: ORF TRCN0000472297

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014128.1_s317c1
Derived from:
ccsbBroadEn_14334
DNA Barcode:
TCATACACCCCACCGAACTATCCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MLIP (90523)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472297
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90523 MLIP muscular LMNA interacting p... XM_024446582.1 77.7% 72.9% (many diffs)
2 human 90523 MLIP muscular LMNA interacting p... XM_017011470.1 57.9% 57.4% (many diffs)
3 human 90523 MLIP muscular LMNA interacting p... XM_024446581.1 56.8% 54.6% (many diffs)
4 human 90523 MLIP muscular LMNA interacting p... XM_024446580.1 56% 52.9% (many diffs)
5 human 90523 MLIP muscular LMNA interacting p... XM_024446579.1 53.4% 50.5% (many diffs)
6 human 90523 MLIP muscular LMNA interacting p... NM_138569.2 50.2% 47.5% (many diffs)
7 human 90523 MLIP muscular LMNA interacting p... XM_005249480.5 49.8% 47.1% (many diffs)
8 human 90523 MLIP muscular LMNA interacting p... XM_017011468.1 26.2% 25% (many diffs)
9 human 90523 MLIP muscular LMNA interacting p... XM_017011467.1 24.8% 23.6% (many diffs)
10 human 90523 MLIP muscular LMNA interacting p... XM_005249478.5 24.7% 23.7% (many diffs)
11 human 90523 MLIP muscular LMNA interacting p... XM_017011466.2 24.3% 23.2% (many diffs)
12 human 90523 MLIP muscular LMNA interacting p... XM_017011465.1 24.2% 23% (many diffs)
13 human 90523 MLIP muscular LMNA interacting p... XM_005249476.5 23.3% 22.1% (many diffs)
14 human 90523 MLIP muscular LMNA interacting p... NM_001281747.2 23.1% 22.1% (many diffs)
15 human 90523 MLIP muscular LMNA interacting p... XM_006715245.3 23% 21.9% (many diffs)
16 human 90523 MLIP muscular LMNA interacting p... NM_001281746.2 22.2% 22% (many diffs)
17 human 90523 MLIP muscular LMNA interacting p... XM_017011469.1 20.3% 20.1% (many diffs)
18 human 90523 MLIP muscular LMNA interacting p... XM_024446578.1 19.3% 18.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
768
ORF length:
702
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg cagctggtac cttggatttg aatgttcttc taaatccaat gactacttga
121ccttgaatgc tgggagccaa caagagagag accaagcgaa attgacttgt ccttcagagg
181tcagtggaac gattttacaa gaaagggaat tcgaagcaaa caaacttcaa gggatgcagc
241aaagtgacct cttcaaagct gaatatgtcc ttattgtgga ctccgaaggg gaagatgagg
301ctgcaagcag aaaagttgaa caaggccccc CAGGGGGGAT TGGCACCGCA GCTATCCGGC
361CCAAGTCTCT AGCTATCTCG TCCAGTCTGG TCTCTGATGT AGTGCGTCCC AAAACACAGG
421GGACTGATCT CAAGACCTCA TCACATCCTG AAATGCTTCA TGGGATGGCC CCTCAGCAAA
481AGCATGGGCA GACTCCTACA ACTCTTCCAA GAGCAGCTGG TCGAGAAACC AAATATGCAA
541ATCTCTCCTC ACCAACTTCT ACAGTATCTG AGAGTCAGCT GACTAAGCCT GGAGTAATTC
601GCCCAGTACC TGTAAAATCC AGAATATTAC TGAAAAAAGA GGAGGAAGTC TATGAACCCA
661ACCCTTTCAG TAAATACTTG GAAGATAACA GCGACCTCTT TTCTGAACAG CTGAGTCATC
721CAATGGTGGC TATTCCTGAA CATGAAGCTC TTGATTCCAA AGAGCAATGC CCAACTTTCT
781TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
841CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
901GTGGAAAGGA CGATCATACA CCCCACCGAA CTATCCGACG CGTTAAGTCg acaatcaacc
961tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)