Transcript: Human XM_006715668.2

PREDICTED: Homo sapiens solute carrier family 29 member 4 (SLC29A4), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC29A4 (222962)
Length:
2824
CDS:
687..1703

Additional Resources:

NCBI RefSeq record:
XM_006715668.2
NBCI Gene record:
SLC29A4 (222962)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715668.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043700 AGTGCAGCAATCCAGCTTCTA pLKO.1 653 5UTR 100% 4.950 6.930 N SLC29A4 n/a
2 TRCN0000420801 GACCTCCATCGTGTTTGACAT pLKO_005 450 5UTR 100% 4.950 3.960 N SLC29A4 n/a
3 TRCN0000043698 GCTGCCATACAACAGCTTCAT pLKO.1 393 5UTR 100% 4.950 3.465 N SLC29A4 n/a
4 TRCN0000443399 AGCTTCACCTTCGACAGTCAC pLKO_005 220 5UTR 100% 4.050 2.835 N SLC29A4 n/a
5 TRCN0000444213 TGTCCTCCTGAACAACGTCCT pLKO_005 504 5UTR 100% 2.160 1.512 N SLC29A4 n/a
6 TRCN0000043701 CCTGTCAGACTTCGTGGGCAA pLKO.1 1298 CDS 100% 0.720 0.504 N SLC29A4 n/a
7 TRCN0000079757 GTGTTCAACCTGTCAGACTTT pLKO.1 1290 CDS 100% 4.950 3.465 N Slc29a4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715668.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13440 pDONR223 100% 65.4% 65.5% None 0_1ins534;402T>C n/a
2 ccsbBroad304_13440 pLX_304 0% 65.4% 65.5% V5 0_1ins534;402T>C n/a
3 TRCN0000469666 CTCTACGCATCGAGTATTAGCCCC pLX_317 17.4% 65.4% 65.5% V5 0_1ins534;402T>C n/a
4 TRCN0000489419 ATGACAAGACAACCAGGTTGATTC pLX_317 21.2% 63.7% 63.7% V5 (not translated due to prior stop codon) 0_1ins576 n/a
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