Transcript: Human XM_006716093.3

PREDICTED: Homo sapiens CAS1 domain containing 1 (CASD1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CASD1 (64921)
Length:
1560
CDS:
66..1469

Additional Resources:

NCBI RefSeq record:
XM_006716093.3
NBCI Gene record:
CASD1 (64921)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006716093.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035665 CGAGGCAATGATTCGTGTGAA pLKO.1 195 CDS 100% 4.950 3.960 N CASD1 n/a
2 TRCN0000035668 GCTGGATGCAACTTGTGATTT pLKO.1 1372 CDS 100% 13.200 9.240 N CASD1 n/a
3 TRCN0000412529 TCCTGTTTATGAAGATCTATT pLKO_005 695 CDS 100% 13.200 9.240 N CASD1 n/a
4 TRCN0000121046 CTGCATCAGTTAAAGTGGATT pLKO.1 445 CDS 100% 4.950 3.465 N Casd1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006716093.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08879 pDONR223 100% 58.2% 57.2% None (many diffs) n/a
2 ccsbBroad304_08879 pLX_304 0% 58.2% 57.2% V5 (many diffs) n/a
3 TRCN0000477946 TTTTGACAAAGTAGCTATTCAATA pLX_317 12.1% 58.2% 57.2% V5 (many diffs) n/a
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