Transcript: Human XM_006721757.2

PREDICTED: Homo sapiens solute carrier family 39 member 11 (SLC39A11), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC39A11 (201266)
Length:
2608
CDS:
116..973

Additional Resources:

NCBI RefSeq record:
XM_006721757.2
NBCI Gene record:
SLC39A11 (201266)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006721757.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434903 TCCTGATTGACTCTGATTATA pLKO_005 1099 3UTR 100% 15.000 21.000 N SLC39A11 n/a
2 TRCN0000038365 CGGCTCTACGTTGATGAAGAA pLKO.1 463 CDS 100% 4.950 6.930 N SLC39A11 n/a
3 TRCN0000038368 GCTCTCGTGTTCGTATTCTCT pLKO.1 194 CDS 100% 3.000 4.200 N SLC39A11 n/a
4 TRCN0000423243 CTTTGAGAGTGCCAGGAATTT pLKO_005 622 CDS 100% 13.200 9.240 N SLC39A11 n/a
5 TRCN0000421707 ATGGGACAACAAGCTTCTTTC pLKO_005 1034 3UTR 100% 10.800 7.560 N SLC39A11 n/a
6 TRCN0000038367 GAAGCCCAGATCAGTGGTAAT pLKO.1 881 CDS 100% 10.800 7.560 N SLC39A11 n/a
7 TRCN0000429192 GTGAACTTTCCATCCGGATAG pLKO_005 525 CDS 100% 6.000 4.200 N SLC39A11 n/a
8 TRCN0000038366 CCTGGGATTTGTAGTGATGAT pLKO.1 928 CDS 100% 4.950 3.465 N SLC39A11 n/a
9 TRCN0000421230 CATTGGAATCGGGATCCAGAA pLKO_005 646 CDS 100% 4.050 2.835 N SLC39A11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006721757.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09814 pDONR223 100% 84.7% 83.2% None (many diffs) n/a
2 ccsbBroad304_09814 pLX_304 0% 84.7% 83.2% V5 (many diffs) n/a
3 TRCN0000480061 CTTTACTTATTCTCTTCTATATTC pLX_317 31.7% 84.7% 83.2% V5 (many diffs) n/a
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