Construct: ORF ccsbBroad304_09814
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010992.1_s304c1, BRDN0000402078
- Derived from:
- ccsbBroadEn_09814
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC39A11 (201266)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09814
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 201266 | SLC39A11 | solute carrier family 39 me... | NM_001352691.2 | 99.9% | 99.7% | 331A>G |
| 2 | human | 201266 | SLC39A11 | solute carrier family 39 me... | NM_001352693.2 | 99.9% | 99.7% | 331A>G |
| 3 | human | 201266 | SLC39A11 | solute carrier family 39 me... | NM_139177.4 | 99.9% | 99.7% | 331A>G |
| 4 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024330.1 | 99.9% | 99.7% | 331A>G |
| 5 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024332.1 | 99.9% | 99.7% | 331A>G |
| 6 | human | 201266 | SLC39A11 | solute carrier family 39 me... | NM_001159770.2 | 97.8% | 97.6% | 331A>G;429_449del |
| 7 | human | 201266 | SLC39A11 | solute carrier family 39 me... | NM_001352692.2 | 97.8% | 97.6% | 331A>G;429_449del |
| 8 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_006721755.2 | 97.8% | 97.6% | 331A>G;429_449del |
| 9 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_011524493.1 | 97.8% | 97.6% | 331A>G;429_449del |
| 10 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_011524494.2 | 97.8% | 97.6% | 331A>G;429_449del |
| 11 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_006721757.2 | 84.7% | 83.2% | (many diffs) |
| 12 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024334.2 | 84.7% | 83.2% | (many diffs) |
| 13 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024333.1 | 83.2% | 83% | 0_1ins150;181A>G;279_299del |
| 14 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024336.2 | 83.2% | 83% | 0_1ins150;181A>G;279_299del |
| 15 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024337.1 | 83.2% | 83% | 0_1ins150;181A>G;279_299del |
| 16 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024335.1 | 82.8% | 82.6% | 331A>G;428_429ins171 |
| 17 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_006721756.3 | 76.5% | 65.2% | (many diffs) |
| 18 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_011524495.3 | 71.8% | 64.7% | (many diffs) |
| 19 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024339.1 | 71.3% | 61% | (many diffs) |
| 20 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024338.1 | 69.8% | 59.8% | (many diffs) |
| 21 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_011524496.2 | 69.8% | 55.8% | (many diffs) |
| 22 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024342.1 | 68.4% | 67.6% | (many diffs) |
| 23 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024340.2 | 67% | 61.9% | (many diffs) |
| 24 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_017024341.2 | 67% | 61.9% | (many diffs) |
| 25 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_006721759.1 | 67% | 66.2% | (many diffs) |
| 26 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_006721758.4 | 65.7% | 60.6% | (many diffs) |
| 27 | human | 201266 | SLC39A11 | solute carrier family 39 me... | XM_011524498.3 | 58.3% | 58.1% | (many diffs) |
| 28 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | NM_027216.5 | 86.1% | 90.4% | (many diffs) |
| 29 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_006534134.3 | 86.1% | 90.4% | (many diffs) |
| 30 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249232.1 | 86.1% | 90.4% | (many diffs) |
| 31 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | NM_001166503.1 | 84.4% | 88.6% | (many diffs) |
| 32 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_006534127.3 | 84.4% | 88.6% | (many diffs) |
| 33 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_006534130.3 | 84.4% | 88.6% | (many diffs) |
| 34 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249231.1 | 84.4% | 88.6% | (many diffs) |
| 35 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_017314743.1 | 84.4% | 88.6% | (many diffs) |
| 36 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249230.1 | 80.4% | 84.4% | (many diffs) |
| 37 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249233.1 | 78.9% | 82.8% | (many diffs) |
| 38 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249234.2 | 78.9% | 82.8% | (many diffs) |
| 39 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249235.2 | 78.9% | 82.8% | (many diffs) |
| 40 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249236.2 | 78.9% | 82.8% | (many diffs) |
| 41 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249237.2 | 78.9% | 82.8% | (many diffs) |
| 42 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249238.2 | 78.9% | 82.8% | (many diffs) |
| 43 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249239.2 | 78.9% | 82.8% | (many diffs) |
| 44 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_011249240.2 | 78.9% | 82.8% | (many diffs) |
| 45 | mouse | 69806 | Slc39a11 | solute carrier family 39 (m... | XM_017314742.1 | 78.9% | 82.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1071
- ORF length:
- 1005
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgct ccaaggccac agctctgtgt tccaggcctt gctggggacc ttcttcacct 121 gggggatgac agcagctggg gcagctctcg tgttcgtatt ctctagtgga cagaggcgga 181 tcttagatgg aagtcttggc tttgctgcag gggtcatgtt ggcagcttcc tattggtctc 241 ttctggcccc agcagttgag atggccacgt cctctggggg cttcggtgcc tttgccttct 301 tccctgtggc tgttggcttc acccttggag cggcttttgt ctacttggct gacctcctga 361 tgcctcactt gggtgcagca gaagaccccc agacggccct ggcactgaac ttcggctcta 421 cgttgatgaa gaagaagtct gatcctgagg gtcccgcgct gctcttccct gagagtgaac 481 tttccatccg gatagacaag agtgagaatg gtgaggcata tcagagaaag aaggcggcag 541 ccactggcct tccagagggt cctgctgtcc ctgtgccttc tcgagggaat ctggcacagc 601 ccggcggcag cagctggagg aggatcgcac tgctcatctt ggccatcact atacacaacg 661 ttccagaggg tctcgctgtt ggagttggat ttggggctat agaaaagacg gcatctgcta 721 cctttgagag tgccaggaat ttggccattg gaatcgggat ccagaatttc cccgagggcc 781 tggctgtcag ccttcccttg cgaggggcag gcttctccac ctggagagct ttctggtatg 841 ggcagctgag cggcatggtg gagcccctgg ccggggtctt tggtgccttt gccgtggtgc 901 tggctgagcc catcctgccc tacgctctgg cctttgctgc cggtgccatg gtctacgtgg 961 tcatggacga catcatcccc gaagcccaga tcagtggtaa tgggaaactg gcatcctggg 1021 cctccatcct gggatttgta gtgatgatgt cactggacgt tggcctgggc tacccaactt 1081 tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt 1141 agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta