Construct: ORF ccsbBroadEn_09814

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010992.1_s300c1, BRDN0000388104
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC39A11 (201266)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 201266 SLC39A11 solute carrier family 39 me... NM_001352691.2 99.9% 99.7% 331A>G
2 human 201266 SLC39A11 solute carrier family 39 me... NM_001352693.2 99.9% 99.7% 331A>G
3 human 201266 SLC39A11 solute carrier family 39 me... NM_139177.4 99.9% 99.7% 331A>G
4 human 201266 SLC39A11 solute carrier family 39 me... XM_017024330.1 99.9% 99.7% 331A>G
5 human 201266 SLC39A11 solute carrier family 39 me... XM_017024332.1 99.9% 99.7% 331A>G
6 human 201266 SLC39A11 solute carrier family 39 me... NM_001159770.2 97.8% 97.6% 331A>G;429_449del
7 human 201266 SLC39A11 solute carrier family 39 me... NM_001352692.2 97.8% 97.6% 331A>G;429_449del
8 human 201266 SLC39A11 solute carrier family 39 me... XM_006721755.2 97.8% 97.6% 331A>G;429_449del
9 human 201266 SLC39A11 solute carrier family 39 me... XM_011524493.1 97.8% 97.6% 331A>G;429_449del
10 human 201266 SLC39A11 solute carrier family 39 me... XM_011524494.2 97.8% 97.6% 331A>G;429_449del
11 human 201266 SLC39A11 solute carrier family 39 me... XM_006721757.2 84.7% 83.2% (many diffs)
12 human 201266 SLC39A11 solute carrier family 39 me... XM_017024334.2 84.7% 83.2% (many diffs)
13 human 201266 SLC39A11 solute carrier family 39 me... XM_017024333.1 83.2% 83% 0_1ins150;181A>G;279_299del
14 human 201266 SLC39A11 solute carrier family 39 me... XM_017024336.2 83.2% 83% 0_1ins150;181A>G;279_299del
15 human 201266 SLC39A11 solute carrier family 39 me... XM_017024337.1 83.2% 83% 0_1ins150;181A>G;279_299del
16 human 201266 SLC39A11 solute carrier family 39 me... XM_017024335.1 82.8% 82.6% 331A>G;428_429ins171
17 human 201266 SLC39A11 solute carrier family 39 me... XM_006721756.3 76.5% 65.2% (many diffs)
18 human 201266 SLC39A11 solute carrier family 39 me... XM_011524495.3 71.8% 64.7% (many diffs)
19 human 201266 SLC39A11 solute carrier family 39 me... XM_017024339.1 71.3% 61% (many diffs)
20 human 201266 SLC39A11 solute carrier family 39 me... XM_017024338.1 69.8% 59.8% (many diffs)
21 human 201266 SLC39A11 solute carrier family 39 me... XM_011524496.2 69.8% 55.8% (many diffs)
22 human 201266 SLC39A11 solute carrier family 39 me... XM_017024342.1 68.4% 67.6% (many diffs)
23 human 201266 SLC39A11 solute carrier family 39 me... XM_017024340.2 67% 61.9% (many diffs)
24 human 201266 SLC39A11 solute carrier family 39 me... XM_017024341.2 67% 61.9% (many diffs)
25 human 201266 SLC39A11 solute carrier family 39 me... XM_006721759.1 67% 66.2% (many diffs)
26 human 201266 SLC39A11 solute carrier family 39 me... XM_006721758.4 65.7% 60.6% (many diffs)
27 human 201266 SLC39A11 solute carrier family 39 me... XM_011524498.3 58.3% 58.1% (many diffs)
28 mouse 69806 Slc39a11 solute carrier family 39 (m... NM_027216.5 86.1% 90.4% (many diffs)
29 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_006534134.3 86.1% 90.4% (many diffs)
30 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249232.1 86.1% 90.4% (many diffs)
31 mouse 69806 Slc39a11 solute carrier family 39 (m... NM_001166503.1 84.4% 88.6% (many diffs)
32 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_006534127.3 84.4% 88.6% (many diffs)
33 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_006534130.3 84.4% 88.6% (many diffs)
34 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249231.1 84.4% 88.6% (many diffs)
35 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_017314743.1 84.4% 88.6% (many diffs)
36 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249230.1 80.4% 84.4% (many diffs)
37 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249233.1 78.9% 82.8% (many diffs)
38 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249234.2 78.9% 82.8% (many diffs)
39 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249235.2 78.9% 82.8% (many diffs)
40 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249236.2 78.9% 82.8% (many diffs)
41 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249237.2 78.9% 82.8% (many diffs)
42 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249238.2 78.9% 82.8% (many diffs)
43 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249239.2 78.9% 82.8% (many diffs)
44 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_011249240.2 78.9% 82.8% (many diffs)
45 mouse 69806 Slc39a11 solute carrier family 39 (m... XM_017314742.1 78.9% 82.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT CCAAGGCCAC AGCTCTGTGT TCCAGGCCTT GCTGGGGACC TTCTTCACCT
121GGGGGATGAC AGCAGCTGGG GCAGCTCTCG TGTTCGTATT CTCTAGTGGA CAGAGGCGGA
181TCTTAGATGG AAGTCTTGGC TTTGCTGCAG GGGTCATGTT GGCAGCTTCC TATTGGTCTC
241TTCTGGCCCC AGCAGTTGAG ATGGCCACGT CCTCTGGGGG CTTCGGTGCC TTTGCCTTCT
301TCCCTGTGGC TGTTGGCTTC ACCCTTGGAG CGGCTTTTGT CTACTTGGCT GACCTCCTGA
361TGCCTCACTT GGGTGCAGCA GAAGACCCCC AGACGGCCCT GGCACTGAAC TTCGGCTCTA
421CGTTGATGAA GAAGAAGTCT GATCCTGAGG GTCCCGCGCT GCTCTTCCCT GAGAGTGAAC
481TTTCCATCCG GATAGACAAG AGTGAGAATG GTGAGGCATA TCAGAGAAAG AAGGCGGCAG
541CCACTGGCCT TCCAGAGGGT CCTGCTGTCC CTGTGCCTTC TCGAGGGAAT CTGGCACAGC
601CCGGCGGCAG CAGCTGGAGG AGGATCGCAC TGCTCATCTT GGCCATCACT ATACACAACG
661TTCCAGAGGG TCTCGCTGTT GGAGTTGGAT TTGGGGCTAT AGAAAAGACG GCATCTGCTA
721CCTTTGAGAG TGCCAGGAAT TTGGCCATTG GAATCGGGAT CCAGAATTTC CCCGAGGGCC
781TGGCTGTCAG CCTTCCCTTG CGAGGGGCAG GCTTCTCCAC CTGGAGAGCT TTCTGGTATG
841GGCAGCTGAG CGGCATGGTG GAGCCCCTGG CCGGGGTCTT TGGTGCCTTT GCCGTGGTGC
901TGGCTGAGCC CATCCTGCCC TACGCTCTGG CCTTTGCTGC CGGTGCCATG GTCTACGTGG
961TCATGGACGA CATCATCCCC GAAGCCCAGA TCAGTGGTAA TGGGAAACTG GCATCCTGGG
1021CCTCCATCCT GGGATTTGTA GTGATGATGT CACTGGACGT TGGCCTGGGC TACCCAACTT
1081TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)