Transcript: Human XM_006722190.4

PREDICTED: Homo sapiens golgi SNAP receptor complex member 2 (GOSR2), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GOSR2 (9570)
Length:
1363
CDS:
61..705

Additional Resources:

NCBI RefSeq record:
XM_006722190.4
NBCI Gene record:
GOSR2 (9570)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006722190.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230164 ACTTCGGGTTGACCAGTTAAA pLKO_005 261 CDS 100% 13.200 18.480 N GOSR2 n/a
2 TRCN0000382096 ACGAATCACTGCAGTTTAACT pLKO_005 422 CDS 100% 5.625 7.875 N GOSR2 n/a
3 TRCN0000381247 CGTCTAGAACGTCTGGAGATT pLKO_005 199 CDS 100% 4.950 6.930 N GOSR2 n/a
4 TRCN0000381502 CACCACTAACGACTCTGACAC pLKO_005 387 CDS 100% 4.050 5.670 N GOSR2 n/a
5 TRCN0000380197 GAAAGTTCACAACGGCATGGA pLKO_005 453 CDS 100% 2.640 3.696 N GOSR2 n/a
6 TRCN0000381249 ACCAGTTAAAGTATGATGTCC pLKO_005 272 CDS 100% 2.640 2.112 N GOSR2 n/a
7 TRCN0000230165 CTTTCCAGGACAAGTACTTTA pLKO_005 617 CDS 100% 13.200 9.240 N GOSR2 n/a
8 TRCN0000230163 GCAAGCATAGACCAGATATTC pLKO_005 175 CDS 100% 13.200 9.240 N GOSR2 n/a
9 TRCN0000060492 GTCTAGAACGTCTGGAGATTT pLKO.1 200 CDS 100% 13.200 9.240 N GOSR2 n/a
10 TRCN0000380268 ACAAGCAGTCTGTGCACATAG pLKO_005 137 CDS 100% 10.800 7.560 N GOSR2 n/a
11 TRCN0000218114 AGAAGAAGATCCTTGACATTG pLKO_005 545 CDS 100% 10.800 7.560 N GOSR2 n/a
12 TRCN0000380516 ACGAAATCCAAGCAAGCATAG pLKO_005 164 CDS 100% 6.000 4.200 N GOSR2 n/a
13 TRCN0000380925 ACCATACCAATGGACGAATCA pLKO_005 409 CDS 100% 4.950 3.465 N GOSR2 n/a
14 TRCN0000060489 CAGAAGAAGATCCTTGACATT pLKO.1 544 CDS 100% 4.950 3.465 N GOSR2 n/a
15 TRCN0000060488 CCACCATACCAATGGACGAAT pLKO.1 407 CDS 100% 4.950 3.465 N GOSR2 n/a
16 TRCN0000381851 CCAGATATTCAGCCGTCTAGA pLKO_005 186 CDS 100% 4.950 3.465 N GOSR2 n/a
17 TRCN0000115095 TCAGAAGAAGATCCTTGACAT pLKO.1 543 CDS 100% 4.950 3.465 N Gosr2 n/a
18 TRCN0000320331 TCAGAAGAAGATCCTTGACAT pLKO_005 543 CDS 100% 4.950 3.465 N Gosr2 n/a
19 TRCN0000380781 AGACTGCGCTCAGAAACTTCC pLKO_005 302 CDS 100% 4.050 2.835 N GOSR2 n/a
20 TRCN0000381686 AGCGAGAAGAGCTTCTGTCTC pLKO_005 359 CDS 100% 4.050 2.835 N GOSR2 n/a
21 TRCN0000381084 CAACACAGTGATGCGGCTCAT pLKO_005 585 CDS 100% 4.050 2.835 N GOSR2 n/a
22 TRCN0000060491 CCAGAAAGTTCACAACGGCAT pLKO.1 450 CDS 100% 2.160 1.512 N GOSR2 n/a
23 TRCN0000381160 ACTCTGACACCACCATACCAA pLKO_005 398 CDS 100% 3.000 1.800 N GOSR2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006722190.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02200 pDONR223 100% 90.2% 86.6% None (many diffs) n/a
2 ccsbBroad304_02200 pLX_304 0% 90.2% 86.6% V5 (not translated due to frame shift) (many diffs) n/a
3 TRCN0000474841 AGGTGTTCTGTGTGTATCATATAT pLX_317 68.7% 90.2% 86.6% V5 (not translated due to frame shift) (many diffs) n/a
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