Transcript: Mouse XM_011241166.2

PREDICTED: Mus musculus ATPase, Ca++ transporting, plasma membrane 2 (Atp2b2), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Atp2b2 (11941)
Length:
7049
CDS:
542..4180

Additional Resources:

NCBI RefSeq record:
XM_011241166.2
NBCI Gene record:
Atp2b2 (11941)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011241166.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000101872 CCCGTCTACGTACAGTACTTT pLKO.1 1748 CDS 100% 5.625 7.875 N Atp2b2 n/a
2 TRCN0000101874 ACTGGCCTATTCTGTGAAGAA pLKO.1 1846 CDS 100% 4.950 3.960 N Atp2b2 n/a
3 TRCN0000043107 CCAGATAGTGATCGTGCAGTT pLKO.1 3574 CDS 100% 4.050 3.240 N ATP2B2 n/a
4 TRCN0000101871 CGAGCAAATCAGCTACCTCTT pLKO.1 4116 CDS 100% 4.050 3.240 N Atp2b2 n/a
5 TRCN0000415030 CTCAGACTGGCATCATATTTA pLKO_005 1380 CDS 100% 15.000 10.500 N Atp2b2 n/a
6 TRCN0000414181 TGAATGTACCTGGACACTATT pLKO_005 4534 3UTR 100% 13.200 9.240 N Atp2b2 n/a
7 TRCN0000436963 GACAGGGATGAGATGGTTAAG pLKO_005 2402 CDS 100% 10.800 7.560 N Atp2b2 n/a
8 TRCN0000420416 GTAACGTCTATGACAGCATAT pLKO_005 3054 CDS 100% 10.800 7.560 N Atp2b2 n/a
9 TRCN0000437646 TCGCCATCAAGTGTGGCATTA pLKO_005 2670 CDS 100% 10.800 7.560 N Atp2b2 n/a
10 TRCN0000101873 GACACTTATCATCCTGGAGAT pLKO.1 859 CDS 100% 4.050 2.835 N Atp2b2 n/a
11 TRCN0000101870 GCACACCCTTCCAGGCACCAA pLKO.1 4237 3UTR 100% 0.000 0.000 N Atp2b2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011241166.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10690 pDONR223 100% 53% 55.5% None (many diffs) n/a
2 ccsbBroad304_10690 pLX_304 0% 53% 55.5% V5 (many diffs) n/a
3 TRCN0000475250 GAGGATAACAACCGCTTTCCTTCA pLX_317 9.9% 53% 55.5% V5 (many diffs) n/a
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