Transcript: Mouse XM_011244933.2

PREDICTED: Mus musculus bone morphogenetic protein 1 (Bmp1), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Bmp1 (12153)
Length:
2263
CDS:
2..2248

Additional Resources:

NCBI RefSeq record:
XM_011244933.2
NBCI Gene record:
Bmp1 (12153)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244933.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000003499 GCGCTACTGTGGCTATGAGAA pLKO.1 1537 CDS 100% 4.950 6.930 N BMP1 n/a
2 TRCN0000031376 GTACCGTATCTCCCTGCAATT pLKO.1 1894 CDS 100% 0.000 0.000 N Bmp1 n/a
3 TRCN0000309001 GTACCGTATCTCCCTGCAATT pLKO_005 1894 CDS 100% 0.000 0.000 N Bmp1 n/a
4 TRCN0000031377 GACACCATTGTTCCCAAGTAT pLKO.1 866 CDS 100% 5.625 4.500 N Bmp1 n/a
5 TRCN0000308933 GACACCATTGTTCCCAAGTAT pLKO_005 866 CDS 100% 5.625 4.500 N Bmp1 n/a
6 TRCN0000031375 CCGTTTGTGATTGGAGGGAAT pLKO.1 422 CDS 100% 4.050 2.835 N Bmp1 n/a
7 TRCN0000308935 CCGTTTGTGATTGGAGGGAAT pLKO_005 422 CDS 100% 4.050 2.835 N Bmp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244933.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05897 pDONR223 100% 66.2% 68.6% None (many diffs) n/a
2 ccsbBroad304_05897 pLX_304 0% 66.2% 68.6% V5 (many diffs) n/a
3 TRCN0000477087 GCGCGCCTTTGGAGAACAACTCGG pLX_317 13.6% 66.2% 68.6% V5 (many diffs) n/a
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