Transcript: Mouse XM_011244985.2

PREDICTED: Mus musculus integrator complex subunit 6 (Ints6), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ints6 (18130)
Length:
6636
CDS:
714..3368

Additional Resources:

NCBI RefSeq record:
XM_011244985.2
NBCI Gene record:
Ints6 (18130)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244985.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000111162 GCCACTAATGATTCAATAGTA pLKO.1 2820 CDS 100% 5.625 7.875 N Ints6 n/a
2 TRCN0000349014 ACTGACCTGTGTCAACTTATT pLKO_005 1835 CDS 100% 13.200 10.560 N Ints6 n/a
3 TRCN0000111161 GCCAATCAAATCAACCATATT pLKO.1 3336 CDS 100% 13.200 9.240 N Ints6 n/a
4 TRCN0000331625 GCCAATCAAATCAACCATATT pLKO_005 3336 CDS 100% 13.200 9.240 N Ints6 n/a
5 TRCN0000311159 GTTGGGATCAGAGACTATTTG pLKO_005 1201 CDS 100% 13.200 9.240 N Ints6 n/a
6 TRCN0000001266 CCAGCATCTTCACTCAACAAA pLKO.1 3069 CDS 100% 5.625 3.938 N INTS6 n/a
7 TRCN0000111164 CCAATCCCTAAGGACAGCTTT pLKO.1 980 CDS 100% 4.950 3.465 N Ints6 n/a
8 TRCN0000111163 GCCAGATATATCAAGACCTTT pLKO.1 1463 CDS 100% 4.950 3.465 N Ints6 n/a
9 TRCN0000304970 AGCTGTCACAAGCTCATATAT pLKO_005 1503 CDS 100% 15.000 9.000 N Ints6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244985.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02962 pDONR223 100% 92.2% 95.8% None (many diffs) n/a
2 ccsbBroad304_02962 pLX_304 0% 92.2% 95.8% V5 (many diffs) n/a
3 TRCN0000470451 AATGGACCGCACAGCGCCGTTTAT pLX_317 15.7% 92.2% 95.8% V5 (many diffs) n/a
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