Construct: ORF ccsbBroadEn_02962

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011162.1_s300c1, BRDN0000393845
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
INTS6 (26512)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26512 INTS6 integrator complex subunit 6 NM_012141.3 100% 100%
2 human 26512 INTS6 integrator complex subunit 6 XM_011535040.3 100% 100%
3 human 26512 INTS6 integrator complex subunit 6 NM_001039937.2 98.5% 98.5% 0_1ins39
4 human 26512 INTS6 integrator complex subunit 6 NM_001306091.2 79.9% 79.9% 0_1ins534
5 human 26512 INTS6 integrator complex subunit 6 XM_011535041.2 75.8% 75.8% 0_1ins642
6 human 26512 INTS6 integrator complex subunit 6 XM_017020540.2 51.2% 51.2% 0_1ins1296
7 human 26512 INTS6 integrator complex subunit 6 NM_001039938.2 12.8% 12.8% 341T>G;343G>A;345_345delTins2317
8 mouse 18130 Ints6 integrator complex subunit 6 NM_008715.2 92.3% 95.9% (many diffs)
9 mouse 18130 Ints6 integrator complex subunit 6 XM_011244986.2 92.3% 95.9% (many diffs)
10 mouse 18130 Ints6 integrator complex subunit 6 XM_006518680.3 92.2% 95.8% (many diffs)
11 mouse 18130 Ints6 integrator complex subunit 6 XM_011244985.2 92.2% 95.8% (many diffs)
12 mouse 18130 Ints6 integrator complex subunit 6 XM_017315908.1 92.2% 95.8% (many diffs)
13 mouse 18130 Ints6 integrator complex subunit 6 XM_006518682.3 91.2% 94.8% (many diffs)
14 mouse 18130 Ints6 integrator complex subunit 6 XM_017315909.1 91.2% 94.8% (many diffs)
15 mouse 18130 Ints6 integrator complex subunit 6 XM_006518683.2 72.8% 75.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2727
ORF length:
2661
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC CATCTTACTG TTCCTGATAG ACACGTCTGC CTCTATGAAC CAGCGCAGCC
121ATCTGGGCAC CACCTACCTG GACACGGCCA AAGGCGCGGT AGAGACCTTC ATGAAGCTCC
181GTGCCCGGGA CCCTGCCAGC AGAGGAGACA GGTATATGCT GGTCACTTTC GAAGAGCCGC
241CCTATGCTAT CAAGGCTGGA TGGAAAGAAA ACCATGCAAC GTTTATGAAT GAATTGAAAA
301ACCTTCAGGC TGAAGGACTT ACGACTCTTG GCCAATCCCT AAGGACAGCT TTTGATTTAT
361TAAATTTAAA TAGATTAGTA ACTGGCATAG ACAACTATGG GCAGGGAAGA AACCCTTTTT
421TCTTGGAGCC AGCAATAATT ATCACAATTA CTGATGGGAG CAAGTTGACT ACCACCAGTG
481GAGTCCAGGA TGAGCTTCAT TTACCTCTTA ATTCTCCTTT GCCTGGAAGT GAATTGACCA
541AGGAACCTTT TCGTTGGGAT CAGAGACTCT TTGCATTAGT GTTGCGGTTG CCTGGCACCA
601TGTCAGTAGA ATCAGAACAG TTGACAGGTG TGCCTTTAGA TGACTCTGCA ATCACACCAA
661TGTGTGAAGT GACAGGCGGC CGTTCATATT CTGTGTGTTC TCCAAGAATG CTTAATCAGT
721GTCTGGAGTC CTTGGTGCAG AAAGTACAAA GTGGGGTGGT AATAAACTTT GAAAAAGCAG
781GACCAGATCC TTCCCCTGTA GAAGATGGGC AGCCAGATAT ATCAAGGCCT TTTGGATCTC
841AGCCTTGGCA TAGCTGTCAC AAACTCATAT ATGTCAGACC AAATCCTAAA ACTGGGGTTC
901CTATAGGTCA TTGGCCTGTT CCAGAGTCTT TTTGGCCAGA TCAAAATTCG CCAACACTAC
961CACCTCGTAC ATCTCATCCT GTAGTGAAGT TTTCCTGTAC AGACTGTGAA CCAATGGTTA
1021TTGATAAACT TCCTTTTGAC AAATATGAGT TGGAACCTTC ACCACTGACT CAATTTATCC
1081TGGAAAGGAA ATCTCCTCAA ACATGTTGGC AGGTGTACGT GAGCAATAGT GCAAAATACA
1141GTGAACTTGG TCATCCTTTT GGTTACTTGA AAGCCAGTAC AGCACTGAAC TGTGTCAACT
1201TATTTGTGAT GCCTTACAAT TATCCAGTCC TTCTTCCCCT CTTAGATGAC TTGTTTAAAG
1261TGCATAAAGC AAAACCAACA TTGAAGTGGA GACAGTCATT TGAAAGTTAT TTGAAGACAA
1321TGCCTCCCTA CTATCTTGGG CCCTTGAAGA AAGCTGTTAG GATGATGGGA GCACCTAACC
1381TAATAGCAGA CAGTATGGAA TATGGACTTA GTTACAGTGT CATTTCATAC CTCAAAAAAC
1441TGAGTCAACA GGCCAAAATA GAATCTGATC GAGTCATTGG ATCTGTAGGC AAAAAAGTAG
1501TACAGGAGAC TGGAATAAAA GTCCGGAGCC GATCACATGG TTTATCAATG GCATATAGGA
1561AAGATTTTCA ACAACTCCTC CAGGGAATTT CAGAGGATGT CCCTCACAGA CTGCTAGACC
1621TTAATATGAA GGAATACACT GGGTTCCAAG TTGCTTTGCT GAATAAGGAT TTGAAGCCAC
1681AGACATTTAG AAATGCTTAT GACATACCAA GACGAAATCT TTTGGATCAC TTAACAAGAA
1741TGAGATCTAA TCTTTTGAAG AGCACTCGCA GATTTCTGAA AGGACAGGAC GAAGATCAAG
1801TGCACAGTGT TCCTATAGCA CAAATGGGGA ACTACCAGGA ATACCTCAAG CAAGTACCTT
1861CTCCACTAAG AGAACTTGAT CCTGATCAGC CACGAAGGTT GCATACATTT GGCAACCCCT
1921TTAAGCTGGA TAAGAAGGGT ATGATGATAG ATGAAGCAGA TGAATTTGTG GCTGGACCTC
1981AAAATAAACA TAAACGACCC GGAGAACCAA ATATGCAAGG GATCCCTAAA AGACGTCGGT
2041GTATGTCTCC ACTACTAAGA GGCAGACAGC AGAATCCTGT TGTAAACAAT CATATTGGGG
2101GAAAAGGACC ACCTGCACCT ACAACTCAAG CACAGCCAGA TCTTATTAAA CCTCTTCCTC
2161TTCATAAAAT TTCAGAAACC ACTAATGATT CGATAATACA TGATGTGGTT GAAAATCATG
2221TTGCAGACCA ACTTTCATCA GACATTACAC CAAATGCTAT GGATACGGAA TTTTCAGCAT
2281CTTCTCCAGC CAGTTTACTG GAACGGCCAA CCAATCATAT GGAGGCTCTT GGTCATGACC
2341ATTTAGGAAC CAATGACCTC ACTGTTGGTG GATTTTTAGA AAATCATGAG GAGCCAAGAG
2401ATAAAGAACA ATGTGCTGAA GAGAACATAC CAGCATCTTC ACTCAACAAA GGAAAGAAAT
2461TGATGCATTG CAGAAGCCAT GAAGAGGTCA ATACTGAACT AAAAGCACAA ATAATGAAAG
2521AGATCCGAAA GCCAGGAAGA AAATATGAAA GAATCTTCAC TTTACTGAAG CATGTGCAAG
2581GCAGTTTACA AACAAGACTA ATATTTTTAC AAAATGTCAT TAAAGAAGCA TCAAGGTTTA
2641AAAAACGAAT GCTAATAGAA CAACTGGAGA ACTTCTTGGA TGAAATTCAT CGAAGAGCCA
2701ATCAGATCAA CCATATTAAT AGCAATTACC CAACTTTCTT GTACAAAGTt ggcattataa
2761gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)