Transcript: Mouse XM_011247308.2

PREDICTED: Mus musculus sortilin-related VPS10 domain containing receptor 1 (Sorcs1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Sorcs1 (58178)
Length:
7891
CDS:
668..4207

Additional Resources:

NCBI RefSeq record:
XM_011247308.2
NBCI Gene record:
Sorcs1 (58178)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247308.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000124720 GCTCGCTGTATTCGTCATCTA pLKO.1 4006 CDS 100% 4.950 6.930 N Sorcs1 n/a
2 TRCN0000417820 TTTGGAGGTCAACCGATTATG pLKO_005 1287 CDS 100% 13.200 10.560 N SORCS1 n/a
3 TRCN0000432614 TATGAGGTAGCAGGGATAAAG pLKO_005 2075 CDS 100% 13.200 9.240 N SORCS1 n/a
4 TRCN0000124723 CCATTGCGGTATATGAGGAAT pLKO.1 3573 CDS 100% 4.950 3.465 N Sorcs1 n/a
5 TRCN0000124719 CGCTCTTGTCAAGTGCATCAT pLKO.1 4385 3UTR 100% 4.950 3.465 N Sorcs1 n/a
6 TRCN0000124721 GCAGACTTTGACTGTGACTAT pLKO.1 2843 CDS 100% 4.950 3.465 N Sorcs1 n/a
7 TRCN0000124722 CATTGCGGTATATGAGGAATT pLKO.1 3574 CDS 100% 0.000 0.000 N Sorcs1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247308.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000492355 CGACCAAGTGATGCCGATTCTTCT pLX_317 13.5% 84.8% 88.8% V5 (many diffs) n/a
2 TRCN0000491704 AAAAATAGACCATACGTCCGGAAT pLX_317 4.7% 84.8% 88.8% V5 (not translated due to prior stop codon) (many diffs) n/a
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