Transcript: Mouse XM_011247326.2

PREDICTED: Mus musculus plasminogen receptor, C-terminal lysine transmembrane protein (Plgrkt), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Plgrkt (67759)
Length:
2415
CDS:
1758..2201

Additional Resources:

NCBI RefSeq record:
XM_011247326.2
NBCI Gene record:
Plgrkt (67759)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247326.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000305338 GACAAATGAAGTCACAGTTAT pLKO_005 2193 CDS 100% 13.200 9.240 N Plgrkt n/a
2 TRCN0000124965 CCAGCCTTTCTCGTTCCTATA pLKO.1 1989 CDS 100% 10.800 7.560 N Plgrkt n/a
3 TRCN0000309563 CCAGCCTTTCTCGTTCCTATA pLKO_005 1989 CDS 100% 10.800 7.560 N Plgrkt n/a
4 TRCN0000305399 TCATCTTCACCTACCAGTATG pLKO_005 2023 CDS 100% 10.800 7.560 N Plgrkt n/a
5 TRCN0000124966 CACCTTTGAAAGCCTTGAGAA pLKO.1 2141 CDS 100% 4.950 3.465 N Plgrkt n/a
6 TRCN0000124967 CTTTAGCAACTGGAGCACTAA pLKO.1 1957 CDS 100% 4.950 3.465 N Plgrkt n/a
7 TRCN0000309561 CTTTAGCAACTGGAGCACTAA pLKO_005 1957 CDS 100% 4.950 3.465 N Plgrkt n/a
8 TRCN0000124968 GAGGACATATTGGAAACAGAA pLKO.1 2088 CDS 100% 4.950 3.465 N Plgrkt n/a
9 TRCN0000124964 GCACAAAGTTGTTGGCTTGAA pLKO.1 2241 3UTR 100% 4.950 3.465 N Plgrkt n/a
10 TRCN0000309562 GCACAAAGTTGTTGGCTTGAA pLKO_005 2241 3UTR 100% 4.950 3.465 N Plgrkt n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247326.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08598 pDONR223 100% 85.2% 82.3% None (many diffs) n/a
2 ccsbBroad304_08598 pLX_304 0% 85.2% 82.3% V5 (many diffs) n/a
3 TRCN0000492048 AGCTAATAAACATTTGAACCATAA pLX_317 34.4% 85.2% 82.3% V5 (many diffs) n/a
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