Transcript: Human XM_011509112.3

PREDICTED: Homo sapiens CUGBP Elav-like family member 3 (CELF3), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CELF3 (11189)
Length:
8188
CDS:
212..1381

Additional Resources:

NCBI RefSeq record:
XM_011509112.3
NBCI Gene record:
CELF3 (11189)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011509112.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429979 AGGACGTCCGGAAGATGTTTG pLKO_005 309 CDS 100% 10.800 7.560 N CELF3 n/a
2 TRCN0000005727 CCTCAGCTAGAGGTAGGATAT pLKO.1 1858 3UTR 100% 10.800 7.560 N CELF3 n/a
3 TRCN0000005729 GCGCCTCAAAGTCCAGCTAAA pLKO.1 1330 CDS 100% 10.800 7.560 N CELF3 n/a
4 TRCN0000418643 GCGCCTCAAAGTCCAGCTAAA pLKO_005 1330 CDS 100% 10.800 7.560 N Celf3 n/a
5 TRCN0000422671 GCTTTGTGAGTTTCGACAATC pLKO_005 1254 CDS 100% 10.800 7.560 N CELF3 n/a
6 TRCN0000431535 GCTTTGTGAGTTTCGACAATC pLKO_005 1254 CDS 100% 10.800 7.560 N Celf3 n/a
7 TRCN0000412725 TGACCGAGCCACCAATCAAAG pLKO_005 1222 CDS 100% 10.800 7.560 N CELF3 n/a
8 TRCN0000005728 CGTCATCTCAGCCAAAGTCTT pLKO.1 1198 CDS 100% 4.950 3.465 N CELF3 n/a
9 TRCN0000422770 GAGAAGACCGGAAGCTCTTTG pLKO_005 258 CDS 100% 10.800 6.480 N CELF3 n/a
10 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 8077 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011509112.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11611 pDONR223 100% 83.2% 82.7% None (many diffs) n/a
2 ccsbBroad304_11611 pLX_304 0% 83.2% 82.7% V5 (many diffs) n/a
3 TRCN0000475880 TCGTGGCATCAAGGAAGATTCACG pLX_317 23.5% 83.2% 82.7% V5 (many diffs) n/a
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