Transcript: Human XM_011509905.3

PREDICTED: Homo sapiens signaling lymphocytic activation molecule family member 1 (SLAMF1), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLAMF1 (6504)
Length:
3716
CDS:
489..1079

Additional Resources:

NCBI RefSeq record:
XM_011509905.3
NBCI Gene record:
SLAMF1 (6504)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011509905.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000061673 CCTCCACGTTATCTAGGAGAT pLKO.1 338 5UTR 100% 4.050 5.670 N SLAMF1 n/a
2 TRCN0000373540 ACCCTTGCACCACCATATATG pLKO_005 973 CDS 100% 13.200 10.560 N SLAMF1 n/a
3 TRCN0000061675 GATTCTCATCATGGTGGTAAT pLKO.1 821 CDS 100% 10.800 7.560 N SLAMF1 n/a
4 TRCN0000061674 CCACTCCAGAAATTAAAGTTT pLKO.1 496 CDS 100% 5.625 3.938 N SLAMF1 n/a
5 TRCN0000061676 CCAGGTCCTCTTCAGAAGAAA pLKO.1 930 CDS 100% 5.625 3.938 N SLAMF1 n/a
6 TRCN0000061677 CAGCAACAATTCCCAGACCTT pLKO.1 716 CDS 100% 2.640 1.848 N SLAMF1 n/a
7 TRCN0000373609 CTTGGCTGGAACTGGATAATA pLKO_005 1394 3UTR 100% 15.000 9.000 N SLAMF1 n/a
8 TRCN0000373541 TGCCTGCAGTTGAGGCTTTAT pLKO_005 470 5UTR 100% 13.200 7.920 N SLAMF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011509905.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01539 pDONR223 100% 58.5% 58.2% None 0_1ins412;2_3insGAGCA n/a
2 ccsbBroad304_01539 pLX_304 0% 58.5% 58.2% V5 0_1ins412;2_3insGAGCA n/a
3 TRCN0000480220 ACGTAATAGCCACAGACAGCGTCC pLX_317 28.3% 58.5% 58.2% V5 0_1ins412;2_3insGAGCA n/a
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