Transcript: Human XM_011511018.3

PREDICTED: Homo sapiens RANBP2 like and GRIP domain containing 4 (RGPD4), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RGPD4 (285190)
Length:
5161
CDS:
34..5097

Additional Resources:

NCBI RefSeq record:
XM_011511018.3
NBCI Gene record:
RGPD4 (285190)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011511018.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256081 AGTCAGTCACCAGCATATAAT pLKO_005 2668 CDS 100% 15.000 7.500 Y RGPD6 n/a
2 TRCN0000364583 ATACCAGCCACTTACAATTAA pLKO_005 1514 CDS 100% 15.000 7.500 Y RGPD4 n/a
3 TRCN0000364658 ATGGGTCAGCATGGTAATAAT pLKO_005 934 CDS 100% 15.000 7.500 Y RGPD4 n/a
4 TRCN0000337207 CAGGCGTTCAGTGGAATTAAA pLKO_005 282 CDS 100% 15.000 7.500 Y RGPD3 n/a
5 TRCN0000435814 CCAGGAAGTCCTGCAATTTAT pLKO_005 409 CDS 100% 15.000 7.500 Y RGPD5 n/a
6 TRCN0000017740 CCCAGGAAGTCCTGCAATTTA pLKO.1 408 CDS 100% 15.000 7.500 Y RGPD4 n/a
7 TRCN0000337210 AGTCAACGAGAGGATTCTATT pLKO_005 107 CDS 100% 13.200 6.600 Y RGPD3 n/a
8 TRCN0000364584 ATGAGAAGGGACCAAGTATTA pLKO_005 4222 CDS 100% 13.200 6.600 Y RGPD4 n/a
9 TRCN0000337140 CAAGAAGTAAAGGCCATTAAG pLKO_005 2482 CDS 100% 13.200 6.600 Y RGPD3 n/a
10 TRCN0000364585 GAAAGATGATGATGCCTATAA pLKO_005 3099 CDS 100% 13.200 6.600 Y RGPD4 n/a
11 TRCN0000265708 GATGTTGCAGACTCGTTTAAG pLKO_005 4387 CDS 100% 13.200 6.600 Y RGPD6 n/a
12 TRCN0000256084 GCGAAGAGAACAAGTACTAAA pLKO_005 3333 CDS 100% 13.200 6.600 Y RGPD6 n/a
13 TRCN0000337141 TTAGATGACAGTGATTCAAAT pLKO_005 2200 CDS 100% 13.200 6.600 Y RGPD3 n/a
14 TRCN0000369387 AGGATGTTGCAGACTCGTTTA pLKO_005 4385 CDS 100% 10.800 5.400 Y RGPD4 n/a
15 TRCN0000262421 CTACACCATCTCCTACCAAAT pLKO_005 2369 CDS 100% 10.800 5.400 Y RGPD2 n/a
16 TRCN0000163545 GCCAAGAAGTAAAGGCCATTA pLKO.1 2480 CDS 100% 10.800 5.400 Y RGPD1 n/a
17 TRCN0000369388 TTACTGCTGGCCTATGCTAAT pLKO_005 736 CDS 100% 10.800 5.400 Y RGPD4 n/a
18 TRCN0000017742 GATTGCAGAATTGCTTTGTAA pLKO.1 330 CDS 100% 5.625 2.813 Y RGPD4 n/a
19 TRCN0000150710 CCAGCATATAATTCCCAGTAT pLKO.1 2677 CDS 100% 4.950 2.475 Y RGPD5 n/a
20 TRCN0000017738 CGTTCAAGTTTAGAGTGGAAT pLKO.1 625 CDS 100% 4.950 2.475 Y RGPD4 n/a
21 TRCN0000152360 CGTTCAAGTTTAGAGTGGAAT pLKO.1 625 CDS 100% 4.950 2.475 Y RGPD5 n/a
22 TRCN0000162173 CGTTCAAGTTTAGAGTGGAAT pLKO.1 625 CDS 100% 4.950 2.475 Y RGPD1 n/a
23 TRCN0000158488 CCACTTACAATTAAAGGAGAA pLKO.1 1521 CDS 100% 4.050 2.025 Y RGPD1 n/a
24 TRCN0000017741 CGTGTGTTGTACAGACCCTTA pLKO.1 647 CDS 100% 4.050 2.025 Y RGPD4 n/a
25 TRCN0000165640 GCTCACAGATTTCTGGGTCTT pLKO.1 217 CDS 100% 4.050 2.025 Y RGPD1 n/a
26 TRCN0000017739 CCGTTGAATGTTACAGGCGTT pLKO.1 269 CDS 100% 2.160 1.080 Y RGPD4 n/a
27 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 5115 3UTR 100% 5.625 2.813 Y KLHL30 n/a
28 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 5115 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011511018.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.