Transcript: Human XM_011512053.2

PREDICTED: Homo sapiens tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 (TANC1), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TANC1 (85461)
Length:
7440
CDS:
154..5793

Additional Resources:

NCBI RefSeq record:
XM_011512053.2
NBCI Gene record:
TANC1 (85461)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011512053.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000419129 GTTGACTCCTGGTGGTAAATT pLKO_005 5833 3UTR 100% 15.000 21.000 N TANC1 n/a
2 TRCN0000149444 GCAGATTGTTAGACTGCTGTT pLKO.1 3582 CDS 100% 4.050 5.670 N TANC1 n/a
3 TRCN0000148462 CCTGATTATGGAGATACGCTT pLKO.1 2011 CDS 100% 2.640 3.696 N TANC1 n/a
4 TRCN0000418954 AGCAAGGACAGTGGAATTATA pLKO_005 868 CDS 100% 15.000 12.000 N TANC1 n/a
5 TRCN0000434409 TACAGGACAGAAGTGTTAAAT pLKO_005 2989 CDS 100% 15.000 12.000 N TANC1 n/a
6 TRCN0000128365 GCAGTTCCTATAAAGGGATTA pLKO.1 6369 3UTR 100% 10.800 8.640 N TANC1 n/a
7 TRCN0000441793 AGGGCTCCAGCTCACTAATAA pLKO_005 1109 CDS 100% 15.000 10.500 N TANC1 n/a
8 TRCN0000416580 GATCTGATGCCATTGATATAT pLKO_005 5910 3UTR 100% 15.000 10.500 N TANC1 n/a
9 TRCN0000149388 GCATTCTTAGTGGCGCTTATA pLKO.1 6549 3UTR 100% 13.200 9.240 N TANC1 n/a
10 TRCN0000128884 GCCAAACCAAAGCGATCATTT pLKO.1 5755 CDS 100% 13.200 9.240 N TANC1 n/a
11 TRCN0000146744 CAGGAAGTTAAAGCACGATTT pLKO.1 1264 CDS 100% 10.800 7.560 N TANC1 n/a
12 TRCN0000150272 GCAGAATATGAGAACACCTAA pLKO.1 6334 3UTR 100% 4.950 3.465 N TANC1 n/a
13 TRCN0000130337 GCTTCAGTGCAACATGAAGTT pLKO.1 2421 CDS 100% 0.495 0.347 N TANC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011512053.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.