Transcript: Human XM_011512096.1

PREDICTED: Homo sapiens interleukin 1 receptor like 2 (IL1RL2), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
IL1RL2 (8808)
Length:
3241
CDS:
36..1745

Additional Resources:

NCBI RefSeq record:
XM_011512096.1
NBCI Gene record:
IL1RL2 (8808)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011512096.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000058860 CCATAGGTGGTTTACCAAATT pLKO.1 481 CDS 100% 13.200 18.480 N IL1RL2 n/a
2 TRCN0000058858 GCCAGAGTCAATTCAGTACAT pLKO.1 1448 CDS 100% 4.950 6.930 N IL1RL2 n/a
3 TRCN0000418669 ATAAGGACTGTAACGAGATTA pLKO_005 604 CDS 100% 13.200 17.160 N IL1RL2 n/a
4 TRCN0000426231 ACGATGCTGGAGAGTCAATAA pLKO_005 899 CDS 100% 13.200 9.240 N IL1RL2 n/a
5 TRCN0000058859 GCTGTCATAGAATACATGTAA pLKO.1 424 CDS 100% 5.625 3.938 N IL1RL2 n/a
6 TRCN0000058862 CGGGATGAAGGTTATTCTCAT pLKO.1 1394 CDS 100% 4.950 3.465 N IL1RL2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011512096.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11307 pDONR223 100% 63.6% 60.3% None (many diffs) n/a
2 ccsbBroad304_11307 pLX_304 0% 63.6% 60.3% V5 (many diffs) n/a
3 TRCN0000468698 CTCCTACTGGGCCCTCTCAGATCA pLX_317 32.4% 63.6% 60.3% V5 (many diffs) n/a
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