Transcript: Human XM_011514937.2

PREDICTED: Homo sapiens dystrobrevin binding protein 1 (DTNBP1), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DTNBP1 (84062)
Length:
1180
CDS:
421..1008

Additional Resources:

NCBI RefSeq record:
XM_011514937.2
NBCI Gene record:
DTNBP1 (84062)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011514937.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000379485 AGATGGACCTGATGGACATAT pLKO_005 671 CDS 100% 13.200 9.240 N DTNBP1 n/a
2 TRCN0000382040 GGTGAGGACAGCGACTCTTAA pLKO_005 988 CDS 100% 13.200 9.240 N DTNBP1 n/a
3 TRCN0000083303 ACCTGGAAAGCCAGGTTGTTT pLKO.1 1070 3UTR 100% 0.563 0.394 N DTNBP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011514937.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04321 pDONR223 100% 54.2% 52.5% None (many diffs) n/a
2 ccsbBroad304_04321 pLX_304 0% 54.2% 52.5% V5 (many diffs) n/a
3 TRCN0000471667 TTTCATTCTTTTATTCTGTCTATA pLX_317 38.9% 54.2% 52.5% V5 (many diffs) n/a
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