Construct: ORF TRCN0000471667
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012806.1_s317c1
- Derived from:
- ccsbBroadEn_04321
- DNA Barcode:
- TTTCATTCTTTTATTCTGTCTATA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DTNBP1 (84062)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471667
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | NM_032122.4 | 100% | 100% | |
| 2 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | XM_005249447.4 | 95.3% | 94.8% | (many diffs) |
| 3 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | NM_001271668.1 | 95.1% | 95.1% | 107_108ins51 |
| 4 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | XM_011514936.3 | 90.5% | 90% | (many diffs) |
| 5 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | NM_001271669.1 | 90% | 90% | 55_56ins105 |
| 6 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | NM_183040.2 | 79.8% | 78.9% | (many diffs) |
| 7 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | NM_001271667.1 | 76.9% | 76.9% | 0_1ins243 |
| 8 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | XM_024446567.1 | 57.3% | 52.9% | (many diffs) |
| 9 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | XM_017011349.1 | 54.8% | 52.9% | (many diffs) |
| 10 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | XM_017011348.1 | 54.6% | 52.7% | (many diffs) |
| 11 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | XM_011514937.2 | 54.2% | 52.5% | (many diffs) |
| 12 | human | 84062 | DTNBP1 | dystrobrevin binding protein 1 | NR_036448.2 | 47.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1119
- ORF length:
- 1053
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgct ggagaccctt cgcgagcggc tgctgagcgt gcagcaggat ttcacctccg 121 ggctgaagac tttaagtgac aagtcaagag aagcaaaagt gaaaagcaaa cccaggactg 181 ttccattttt gccaaagtac tctgctggat tagaattact tagcaggtat gaggatacat 241 gggctgcact tcacagaaga gccaaagact gtgcaagtgc tggagagctg gtggatagcg 301 aggtggtcat gctttctgcg cactgggaga agaaaaagac aagcctcgtg gagctgcaag 361 agcagctcca gcagctccca gctttaatcg cagacttaga atccatgaca gcaaatctga 421 ctcatttaga ggcgagtttt gaggaggtag agaacaacct gctgcatctg gaagacttat 481 gtgggcagtg tgaattagaa agatgcaaac atatgcagtc ccagcaactg gagaattaca 541 agaaaaataa gaggaaggaa cttgaaacct tcaaagctga actagatgca gagcacgccc 601 agaaggtcct ggaaatggag cacacccagc aaatgaagct gaaggagcgg cagaagtttt 661 ttgaggaagc cttccagcag gacatggagc agtacctgtc cactggctac cTGCAGATTG 721 CAGAGCGGCG AGAGCCCATA GGCAGCATGT CATCCATGGA AGTGAACGTG GACATGCTGG 781 AGCAGATGGA CCTGATGGAC ATATCGGACC AGGAGGCCCT GGACGTCTTC CTGAACTCTG 841 GAGGAGAAGA GAACACTGTG CTGTCCCCCG CCTTAGGGCC TGAATCCAGT ACCTGTCAGA 901 ATGAGATTAC CCTCCAGGTT CCAAATCCCT CAGAATTAAG AGCCAAGCCA CCTTCTTCTT 961 CCTCCACCTG CACCGACTCG GCCACCCGGG ACATCAGTGA GGGTGGGGAG TCCCCCGTTG 1021 TTCAGTCCGA TGAGGAGGAA GTTCAGGTGG ACACTGCCCT GGCCACATCA CACACTGACA 1081 GAGAGGCCAC TCCGGATGGT GGTGAGGACA GCGACTCTTA CCCAACTTTC TTGTACAAAG 1141 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1201 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1261 ACGATTTCAT TCTTTTATTC TGTCTATAAC GCGTTAAGTC gacaatcaac ctctggatta 1321 caaaatttgt gaaagatt