Transcript: Human XM_011515342.2

PREDICTED: Homo sapiens acyloxyacyl hydrolase (AOAH), transcript variant X13, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
AOAH (313)
Length:
2358
CDS:
133..1368

Additional Resources:

NCBI RefSeq record:
XM_011515342.2
NBCI Gene record:
AOAH (313)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011515342.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000371261 ACTATCCCGCCATCGTTATAT pLKO_005 383 CDS 100% 15.000 21.000 N AOAH n/a
2 TRCN0000050058 CGGCCAGCTAAATAAAGACAT pLKO.1 606 CDS 100% 4.950 3.960 N AOAH n/a
3 TRCN0000371260 AGACTCTGAAGCATCTAAATT pLKO_005 494 CDS 100% 15.000 10.500 N AOAH n/a
4 TRCN0000050062 GCAGTTGTACTCCTTCCTGAA pLKO.1 636 CDS 100% 4.050 2.835 N AOAH n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011515342.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05828 pDONR223 100% 42.9% 37% None (many diffs) n/a
2 ccsbBroad304_05828 pLX_304 0% 42.9% 37% V5 (many diffs) n/a
3 TRCN0000473373 GAATTAGGATAACCACCATAATCT pLX_317 30.9% 42.9% 37% V5 (many diffs) n/a
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