Transcript: Human XM_011515423.2

PREDICTED: Homo sapiens ubiquitin conjugating enzyme E2 D4 (putative) (UBE2D4), transcript variant X10, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UBE2D4 (51619)
Length:
3351
CDS:
74..397

Additional Resources:

NCBI RefSeq record:
XM_011515423.2
NBCI Gene record:
UBE2D4 (51619)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011515423.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000004123 ATCACCCTAATATCAACAGCA pLKO.1 102 CDS 100% 2.640 3.696 N UBE2D4 n/a
2 TRCN0000004121 CTAGAGATTTGGGTCATGTTA pLKO.1 616 3UTR 100% 5.625 3.938 N UBE2D4 n/a
3 TRCN0000272498 CTAGAGATTTGGGTCATGTTA pLKO_005 616 3UTR 100% 5.625 3.938 N UBE2D4 n/a
4 TRCN0000004124 CACCCTAATATCAACAGCAAT pLKO.1 104 CDS 100% 4.950 3.465 N UBE2D4 n/a
5 TRCN0000272499 CTAGCAAGAGAGTGGACACAA pLKO_005 290 CDS 100% 4.950 3.465 N UBE2D4 n/a
6 TRCN0000004120 GCCGACAGAGAGAAGTACAAC pLKO.1 266 CDS 100% 4.950 3.465 N UBE2D4 n/a
7 TRCN0000284778 CTTGATATCCTGCGGTCTCAG pLKO_005 137 CDS 100% 4.050 2.835 N UBE2D4 n/a
8 TRCN0000004122 CAAGGCCGACAGAGAGAAGTA pLKO.1 262 CDS 100% 4.950 2.970 N UBE2D4 n/a
9 TRCN0000284777 AGGACCTGTCGGTGATGACTT pLKO_005 60 5UTR 100% 4.950 3.465 N UBE2D4 n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1742 3UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1742 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011515423.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03347 pDONR223 100% 47.2% 46.7% None (many diffs) n/a
2 ccsbBroad304_03347 pLX_304 0% 47.2% 46.7% V5 (many diffs) n/a
3 TRCN0000474875 GGAGATCAGCCTGCAATCCTGTTA pLX_317 72.2% 47.2% 46.7% V5 (many diffs) n/a
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