Construct: ORF TRCN0000474875

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002997.1_s317c1
Derived from:
ccsbBroadEn_03347
DNA Barcode:
GGAGATCAGCCTGCAATCCTGTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBE2D4 (51619)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474875
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51619 UBE2D4 ubiquitin conjugating enzym... NM_015983.4 100% 100%
2 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_011515420.3 85.7% 85% (many diffs)
3 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_006715734.3 85.7% 85.3% 441_513delinsG
4 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_017012294.1 80.8% 79.6% (many diffs)
5 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_017012293.1 80.3% 79.2% (many diffs)
6 human 7322 UBE2D2 ubiquitin conjugating enzym... NM_003339.3 78% 93.1% (many diffs)
7 human 7321 UBE2D1 ubiquitin conjugating enzym... NM_003338.5 77.5% 91.8% (many diffs)
8 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181891.3 77% 91.8% (many diffs)
9 human 7323 UBE2D3 ubiquitin conjugating enzym... XM_024454202.1 77% 91.8% (many diffs)
10 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_017012292.1 74.9% 73.8% (many diffs)
11 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_024446796.1 74.8% 74.8% 0_1ins111
12 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_024446795.1 74.7% 73.9% (many diffs)
13 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_011515422.3 74.1% 72.7% 0_1ins82;6_7ins32
14 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_017012295.1 63.5% 61.9% 0_1ins82;6_7ins32;327_399delinsG
15 human 7323 UBE2D3 ubiquitin conjugating enzym... XM_017008584.2 62.8% 74.1% (many diffs)
16 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_011515423.2 47.2% 46.7% (many diffs)
17 mouse 76508 Ube2d-ps ubiquitin-conjugating enzym... NR_015577.1 21.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
507
ORF length:
441
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gctaaagcgg atccagaagg aattaaccga cttgcagagg gatcctcctg
121cccagtgttc tgcaggacct gtcggtgatg acttgttcca ctggcaggcc accatcatgg
181gcccGAATGA CAGTCCTTAC CAAGGAGGTG TTTTCTTCCT GACCATCCAC TTTCCTACAG
241ATTACCCGTT CAAGCCCCCA AAGGTTGCTT TCACAACCAA AATTTATCAC CCTAATATCA
301ACAGCAATGG CAGCATCTGC CTTGATATCC TGCGGTCTCA GTGGTCTCCA GCGTTGACTG
361TGTCAAAAGT TCTCTTGTCC ATCTGCTCGC TGCTCTGCGA CCCCAACCCC GATGACCCCC
421TGGTGCCAGA GATAGCACAC ACCTACAAGG CCGACAGAGA GAAGTACAAC AGACTAGCAA
481GAGAGTGGAC ACAAAAATAT GCTATGTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
541GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
601AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAGGAGATCA
661GCCTGCAATC CTGTTAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
721aagatt

Download FASTA (ORF) (Full)