Transcript: Human XM_011516867.2

PREDICTED: Homo sapiens solute carrier family 7 member 13 (SLC7A13), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC7A13 (157724)
Length:
1988
CDS:
99..1484

Additional Resources:

NCBI RefSeq record:
XM_011516867.2
NBCI Gene record:
SLC7A13 (157724)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011516867.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043163 CCATTGGTAAAGTCTCCAAAT pLKO.1 1308 CDS 100% 10.800 15.120 N SLC7A13 n/a
2 TRCN0000043166 GTGTCCATACTTAGCTTCATT pLKO.1 600 CDS 100% 5.625 7.875 N SLC7A13 n/a
3 TRCN0000436128 AGTTCTCAGCGGATTACTATT pLKO_005 1355 CDS 100% 13.200 9.240 N SLC7A13 n/a
4 TRCN0000423241 CCCTCATTAGCATGGATTATG pLKO_005 924 CDS 100% 13.200 9.240 N SLC7A13 n/a
5 TRCN0000043167 CCCTGATGTGTCTGAGGAATA pLKO.1 1463 CDS 100% 10.800 7.560 N SLC7A13 n/a
6 TRCN0000043165 CACGGGTTCATTATGGTCTAT pLKO.1 1166 CDS 100% 4.950 3.465 N SLC7A13 n/a
7 TRCN0000043164 GCCTAAGAAATGTCTGGCATT pLKO.1 494 CDS 100% 4.050 2.835 N SLC7A13 n/a
8 TRCN0000420322 AGATTCCAAATCAAGGTTAAA pLKO_005 1536 3UTR 100% 13.200 7.920 N SLC7A13 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011516867.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09715 pDONR223 100% 98% 97.8% None 655_656ins27;718G>A n/a
2 ccsbBroad304_09715 pLX_304 0% 98% 97.8% V5 655_656ins27;718G>A n/a
3 TRCN0000469249 TAAAAATGACTCATACCGGTTAGG pLX_317 32% 98% 97.8% V5 655_656ins27;718G>A n/a
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