Transcript: Human XM_011517101.2

PREDICTED: Homo sapiens potassium two pore domain channel subfamily K member 9 (KCNK9), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KCNK9 (51305)
Length:
3046
CDS:
91..1296

Additional Resources:

NCBI RefSeq record:
XM_011517101.2
NBCI Gene record:
KCNK9 (51305)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011517101.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435576 TCATCACGTTGACTACCATTG pLKO_005 671 CDS 100% 6.000 8.400 N KCNK9 n/a
2 TRCN0000044555 CCTGCTGAAGCGCATTAAGAA pLKO.1 504 CDS 100% 5.625 3.938 N KCNK9 n/a
3 TRCN0000044554 CGTGGCCTTTAGCTTTATGTA pLKO.1 750 CDS 100% 5.625 3.938 N KCNK9 n/a
4 TRCN0000044556 GAAACTCAAAGCCGAGGAGAT pLKO.1 207 CDS 100% 4.050 2.430 N KCNK9 n/a
5 TRCN0000069603 CGCCTACTACTACTGCTTCAT pLKO.1 654 CDS 100% 4.950 2.475 Y Kcnk15 n/a
6 TRCN0000043729 CCACGCCTACTACTACTGCTT pLKO.1 651 CDS 100% 2.640 1.320 Y KCNK15 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011517101.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03277 pDONR223 100% 77.1% 75.1% None (many diffs) n/a
2 ccsbBroad304_03277 pLX_304 0% 77.1% 75.1% V5 (many diffs) n/a
3 TRCN0000476872 TCGATTCATGTCTGCGGACCAGTG pLX_317 35.1% 77.1% 75.1% V5 (many diffs) n/a
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