Transcript: Human XM_011518650.3

PREDICTED: Homo sapiens ERCC excision repair 6 like 2 (ERCC6L2), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ERCC6L2 (375748)
Length:
5233
CDS:
1868..4393

Additional Resources:

NCBI RefSeq record:
XM_011518650.3
NBCI Gene record:
ERCC6L2 (375748)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011518650.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000018041 CGGTGCCAATGTTGTTGTATT pLKO.1 1352 5UTR 100% 13.200 18.480 N ERCC6L2 n/a
2 TRCN0000167269 CAGTCGTATGAATCAATGGAT pLKO.1 3047 CDS 100% 3.000 4.200 N ERCC6L2 n/a
3 TRCN0000018042 GCGCACCAAGACTCTTATCAA pLKO.1 683 5UTR 100% 5.625 4.500 N ERCC6L2 n/a
4 TRCN0000167413 GAGCTGTGATTACTACCATTA pLKO.1 5031 3UTR 100% 10.800 7.560 N ERCC6L2 n/a
5 TRCN0000167155 CCACCTTCATAATTGGAGAAA pLKO.1 3375 CDS 100% 4.950 3.465 N ERCC6L2 n/a
6 TRCN0000018039 GCTGTCTATCAAACAGTGTTA pLKO.1 765 5UTR 100% 4.950 3.465 N ERCC6L2 n/a
7 TRCN0000168360 GCTGTCAGATTCTGAAACCTT pLKO.1 3661 CDS 100% 3.000 2.100 N ERCC6L2 n/a
8 TRCN0000168118 GCTTCTCAATATCCAGAGGTA pLKO.1 3530 CDS 100% 2.640 1.848 N ERCC6L2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011518650.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14486 pDONR223 100% 54.6% 54.5% None 1_1143del;1150T>C;1425G>T n/a
2 ccsbBroad304_14486 pLX_304 0% 54.6% 54.5% V5 1_1143del;1150T>C;1425G>T n/a
3 TRCN0000469041 ATCACAATTGGACGAATGGAGACG pLX_317 32.5% 54.6% 54.5% V5 1_1143del;1150T>C;1425G>T n/a
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