Construct: ORF TRCN0000469041

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010881.1_s317c1
Derived from:
ccsbBroadEn_14486
DNA Barcode:
ATCACAATTGGACGAATGGAGACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ERCC6L2 (375748)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469041
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 375748 ERCC6L2 ERCC excision repair 6 like 2 XM_011518650.3 54.6% 54.5% 1_1143del;1150T>C;1425G>T
2 human 375748 ERCC6L2 ERCC excision repair 6 like 2 XM_017014707.2 50.4% 50.4% 1_1350del;1357T>C;1632G>T
3 human 375748 ERCC6L2 ERCC excision repair 6 like 2 XM_011518648.3 45.6% 45.6% 1_1638del;1645T>C;1920G>T
4 human 375748 ERCC6L2 ERCC excision repair 6 like 2 XM_011518644.3 36.3% 36.3% 1_2409del;2416T>C;2691G>T
5 human 375748 ERCC6L2 ERCC excision repair 6 like 2 XM_011518641.3 30.4% 30.3% 1_3150del;3157T>C;3432G>T
6 human 375748 ERCC6L2 ERCC excision repair 6 like 2 NM_020207.5 29.4% 29.4% 1_3303del;3310T>C;3585G>T
7 human 375748 ERCC6L2 ERCC excision repair 6 like 2 XR_001746290.2 27.3% (many diffs)
8 human 375748 ERCC6L2 ERCC excision repair 6 like 2 XR_001746291.2 20.9% (many diffs)
9 human 375748 ERCC6L2 ERCC excision repair 6 like 2 XR_929789.2 17.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1446
ORF length:
1380
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa acgttcaaat gagaaagttg ttaatcaaga gcagtcgtat gaatcaatgg
121ataaattttt agatggcgtt caggaagtgg cttatattca ctcaaaccag aatgtaattg
181gatcgagcaa agctgaaaat cacatgagcc gatgggcagc acatgacgta tttgagttga
241agcagttttc tcagctgcct gctaacatag ctgtttgcag ttctaagaca tataaagaaa
301aagtggatgc agatacattg ccacacacaa agaaaggcca gcaacctagt gaaggcagca
361tttcacttcc tctttacatt tcaaatcctg taaaccagaa gaagaaaaaa gtctaccata
421caaaccagac caccttcata attggagaaa caccaaaagg aatccgcaga aaacaatttg
481aagaaatggc ctcttatttt aactcgtctt ctgtaaacga atttgctaaa catataacca
541atgccacatc agaagaacga cagaaaatgc taagagactt ttatgcttct caatatccag
601aggtaaaaga attttttgtg gattctgtgt cacaattcaa caattcttcc tttgagaaag
661gagagcagcg cacccggaag aaatctgata aaagagaatc tcttataaaa ccaaggctgt
721cagattctga aaccttgtca tttaaagatt ctaccaacaa aatttctcaa gtttgcagcc
781taaaaacata taaaagaaaa tcagttaagt ttcagaatca tatttcctat agagaagagg
841tgttttttaa tgatgcagaa actaagaaat cacctgttag ttctactcaa gagattgaca
901gtgggaaaaa cagccaggca tccgaagata ctgtgacatc ccgttctctg aacagtgagt
961ctgaaacacg tgagagaagg ttagaaaata ccatgaaaga CCAACAGGAC CTCACAAGAA
1021CGGGCATTTC AAGAAAAGAA CCCCTTCTCA AATTGGAAAA CAAAAAGATA GAAAATCCAG
1081TGCTGGAAAA TACTTCTGTG ATAAGCTTAC TTGGTGATAC CTCTATTCTT GATGACCTTT
1141TTAAAAGTCA TGGGAACAGT CCCACACAAC TGCCAAAGAA AGTTCTTTCA GGGCCCATGG
1201AAAAAGCAAA ACAGAGACCA AAAGATTTCT GGGACATCTT GAATGAGCAG AATGATGAGA
1261GTCTTAGTAA ACTCACAGAC TTGGCAGTAA TAGAGACTCT GTGTGAAAAA GCACCTCTAG
1321CAGCACCCTT TAAAAGGAGA GAAGAGCCAG CAACTTCTCT TTGGAAATCA AATGAGAAAT
1381TTTTATGGAA GAAATTTAGC CCAAGTGATA CAGATGAAAA CGCAACCAAT ACACAGAGTA
1441CCACATACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1501TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1561CTTGGCTTTA TATATCTTGT GGAAAGGACG AATCACAATT GGACGAATGG AGACGACGCG
1621TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)