Transcript: Human XM_011520747.2

PREDICTED: Homo sapiens fatty acyl-CoA reductase 2 (FAR2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FAR2 (55711)
Length:
4083
CDS:
654..2261

Additional Resources:

NCBI RefSeq record:
XM_011520747.2
NBCI Gene record:
FAR2 (55711)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011520747.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123279 CCTTGCGTATTAAACGTGAAA pLKO.1 2511 3UTR 100% 4.950 6.930 N FAR2 n/a
2 TRCN0000123280 CCTCTTTAATACTGCCCTCTT pLKO.1 2117 CDS 100% 4.050 3.240 N FAR2 n/a
3 TRCN0000123281 CATGAGAAGATCAGAGCTATT pLKO.1 939 CDS 100% 10.800 7.560 N FAR2 n/a
4 TRCN0000123282 CCACATTACATCTGGTAACAT pLKO.1 1622 CDS 100% 5.625 3.938 N FAR2 n/a
5 TRCN0000123283 CGATGCTATTATTGACGAGAT pLKO.1 1268 CDS 100% 4.050 2.835 N FAR2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011520747.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03636 pDONR223 100% 96.1% 96.2% None 1_60del;138G>A n/a
2 ccsbBroad304_03636 pLX_304 0% 96.1% 96.2% V5 1_60del;138G>A n/a
3 TRCN0000480027 TGGCAGCCGGTCCTCCTTCGACCC pLX_317 25.6% 96.1% 96.2% V5 1_60del;138G>A n/a
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