Transcript: Human XM_011522610.1

PREDICTED: Homo sapiens unk like zinc finger (UNKL), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UNKL (64718)
Length:
5355
CDS:
59..2320

Additional Resources:

NCBI RefSeq record:
XM_011522610.1
NBCI Gene record:
UNKL (64718)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011522610.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000033914 CTCTTCGAGTGCAAGTCCAAA pLKO.1 1795 CDS 100% 4.950 6.930 N UNKL n/a
2 TRCN0000137761 GTACTGCTCCAAGTACAACGA pLKO.1 295 CDS 100% 0.264 0.185 N UNKL n/a
3 TRCN0000033915 CCCGGGAGCATCTGGGACTTT pLKO.1 1718 CDS 100% 0.000 0.000 N UNKL n/a
4 TRCN0000033918 CCTGCCGAAGCTGCACTCGCT pLKO.1 2104 CDS 100% 0.000 0.000 N UNKL n/a
5 TRCN0000033917 CCTGTCAGCACCACATCCTCT pLKO.1 2235 CDS 100% 0.880 0.528 N UNKL n/a
6 TRCN0000137735 GATTGAGAAGATCCTGAGCGA pLKO.1 619 CDS 100% 0.660 0.396 N UNKL n/a
7 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 3453 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011522610.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08860 pDONR223 100% 35% 33.5% None (many diffs) n/a
2 ccsbBroad304_08860 pLX_304 0% 35% 33.5% V5 (many diffs) n/a
3 TRCN0000478815 CGAGCGTTTAGGCCCATGTGTTTC pLX_317 38.6% 35% 33.5% V5 (many diffs) n/a
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