Transcript: Human XM_011524367.2

PREDICTED: Homo sapiens RNA binding fox-1 homolog 3 (RBFOX3), transcript variant X21, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RBFOX3 (146713)
Length:
2133
CDS:
596..1483

Additional Resources:

NCBI RefSeq record:
XM_011524367.2
NBCI Gene record:
RBFOX3 (146713)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011524367.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000254935 GCGGCAAATGTTCGGGCAATT pLKO_005 940 CDS 100% 10.800 15.120 N Rbfox3 n/a
2 TRCN0000427693 GCGGCAAATGTTCGGGCAATT pLKO_005 940 CDS 100% 10.800 15.120 N RBFOX3 n/a
3 TRCN0000427232 GTCGTGTATCAGGATGGATTT pLKO_005 1259 CDS 100% 10.800 15.120 N RBFOX3 n/a
4 TRCN0000163797 GAGGAAATTCTGCCACCATTT pLKO.1 441 5UTR 100% 10.800 7.560 N RBFOX3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011524367.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.