Transcript: Human XM_011527435.2

PREDICTED: Homo sapiens URI1 prefoldin like chaperone (URI1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
URI1 (8725)
Length:
3083
CDS:
81..1544

Additional Resources:

NCBI RefSeq record:
XM_011527435.2
NBCI Gene record:
URI1 (8725)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011527435.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000074242 CCTAAGAGGGTCCGAATAAAT pLKO.1 963 CDS 100% 15.000 21.000 N URI1 n/a
2 TRCN0000300943 CCTAAGAGGGTCCGAATAAAT pLKO_005 963 CDS 100% 15.000 21.000 N URI1 n/a
3 TRCN0000074240 CGAAAGGAAGTTCTGTTGGAA pLKO.1 1458 CDS 100% 3.000 4.200 N URI1 n/a
4 TRCN0000300884 CGAAAGGAAGTTCTGTTGGAA pLKO_005 1458 CDS 100% 3.000 4.200 N URI1 n/a
5 TRCN0000074239 CCTTGCCTGATAAATTGTCTT pLKO.1 136 CDS 100% 4.950 3.960 N URI1 n/a
6 TRCN0000300944 CCTTGCCTGATAAATTGTCTT pLKO_005 136 CDS 100% 4.950 3.960 N URI1 n/a
7 TRCN0000375861 TGTCATACTGTAATCTTTAAG pLKO_005 2055 3UTR 100% 13.200 9.240 N Uri1 n/a
8 TRCN0000074238 CCTCTGAATGTCATACTGTAA pLKO.1 2047 3UTR 100% 4.950 3.465 N URI1 n/a
9 TRCN0000300945 CCTCTGAATGTCATACTGTAA pLKO_005 2047 3UTR 100% 4.950 3.465 N URI1 n/a
10 TRCN0000074241 GCTCATAAACCGCATTCCAAA pLKO.1 468 CDS 100% 4.950 3.465 N URI1 n/a
11 TRCN0000331685 GCTCATAAACCGCATTCCAAA pLKO_005 468 CDS 100% 4.950 3.465 N URI1 n/a
12 TRCN0000375862 GATGTTGTGAATGGAGAATAT pLKO_005 1125 CDS 100% 13.200 7.920 N Uri1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011527435.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14003 pDONR223 100% 97.8% 34.3% None (many diffs) n/a
2 ccsbBroad304_14003 pLX_304 0% 97.8% 34.3% V5 (not translated due to prior stop codon) (many diffs) n/a
3 TRCN0000477196 TTAATAACCAAAATTCCCTTCCCA pLX_317 25.9% 97.8% 34.3% V5 (not translated due to prior stop codon) (many diffs) n/a
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