Transcript: Human XM_011530075.1

PREDICTED: Homo sapiens apolipoprotein L2 (APOL2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
APOL2 (23780)
Length:
3258
CDS:
1050..2063

Additional Resources:

NCBI RefSeq record:
XM_011530075.1
NBCI Gene record:
APOL2 (23780)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011530075.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000296614 TTGAGGATTACCTTAAGTATT pLKO_005 1075 CDS 100% 13.200 9.240 N APOL2 n/a
2 TRCN0000310235 GACCAAAGCGGCACCAATGTA pLKO_005 1602 CDS 100% 5.625 3.938 N APOL2 n/a
3 TRCN0000083107 GCTCAACTTTCTCACCAAGAT pLKO.1 2009 CDS 100% 4.950 3.465 N APOL2 n/a
4 TRCN0000290388 GCTCAACTTTCTCACCAAGAT pLKO_005 2009 CDS 100% 4.950 3.465 N APOL2 n/a
5 TRCN0000083105 GCAGTGTGGTAGAACTAGTAA pLKO.1 1546 CDS 100% 0.000 0.000 N APOL2 n/a
6 TRCN0000290315 GCAGTGTGGTAGAACTAGTAA pLKO_005 1546 CDS 100% 0.000 0.000 N APOL2 n/a
7 TRCN0000083103 CCTTCCAAGAATAAAGTCTTT pLKO.1 2816 3UTR 100% 4.950 2.970 N APOL2 n/a
8 TRCN0000083106 TGTTCTTACCTTAGTTGACAA pLKO.1 1664 CDS 100% 4.950 2.970 N APOL2 n/a
9 TRCN0000290384 TGTTCTTACCTTAGTTGACAA pLKO_005 1664 CDS 100% 4.950 2.970 N APOL2 n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2391 3UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2391 3UTR 100% 5.625 2.813 Y EID2B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011530075.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07933 pDONR223 100% 99.9% 99.7% None 6C>N n/a
2 ccsbBroad304_07933 pLX_304 0% 99.9% 99.7% V5 6C>N n/a
3 ccsbBroadEn_15637 pDONR223 0% 38.4% 31.3% None (many diffs) n/a
Download CSV