Transcript: Human XM_011530909.2

PREDICTED: Homo sapiens family with sequence similarity 155 member B (FAM155B), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FAM155B (27112)
Length:
975
CDS:
80..958

Additional Resources:

NCBI RefSeq record:
XM_011530909.2
NBCI Gene record:
FAM155B (27112)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011530909.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000255177 TCGACCTCGTGCTGCATAAAT pLKO_005 870 CDS 100% 15.000 21.000 N Tmem28 n/a
2 TRCN0000163842 CCACTTTCGGAACTTCACTCT pLKO.1 646 CDS 100% 2.640 3.696 N FAM155B n/a
3 TRCN0000278581 CCACTTTCGGAACTTCACTCT pLKO_005 646 CDS 100% 2.640 3.696 N FAM155B n/a
4 TRCN0000158585 CATAAATACTTACAGGCGGAA pLKO.1 884 CDS 100% 2.160 3.024 N FAM155B n/a
5 TRCN0000255180 ACTTGCTCAAAGGCCACTTTC pLKO_005 633 CDS 100% 10.800 7.560 N Tmem28 n/a
6 TRCN0000267548 TGGACGCAGCTTGCACCAAAT pLKO_005 507 CDS 100% 10.800 7.560 N Tmem28 n/a
7 TRCN0000136555 CAGATACAGCAACCTGACCAA pLKO.1 427 CDS 100% 2.640 1.848 N FAM155B n/a
8 TRCN0000278529 CAGATACAGCAACCTGACCAA pLKO_005 427 CDS 100% 2.640 1.848 N FAM155B n/a
9 TRCN0000160442 CTTGCACCAAATTGCAATCTT pLKO.1 516 CDS 100% 0.563 0.338 N FAM155B n/a
10 TRCN0000278582 CTTGCACCAAATTGCAATCTT pLKO_005 516 CDS 100% 0.563 0.338 N FAM155B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011530909.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.