Transcript: Human XM_011530915.2

PREDICTED: Homo sapiens protocadherin 11 X-linked (PCDH11X), transcript variant X12, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PCDH11X (27328)
Length:
4996
CDS:
667..3831

Additional Resources:

NCBI RefSeq record:
XM_011530915.2
NBCI Gene record:
PCDH11X (27328)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011530915.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056354 CCTAAGAACTTGCTGCTTAAT pLKO.1 3385 CDS 100% 13.200 7.920 N PCDH11X n/a
2 TRCN0000056355 GCTAAGATCAATTACCTGCTA pLKO.1 2248 CDS 100% 2.640 1.584 N PCDH11X n/a
3 TRCN0000417523 GTAATCTGGCAATGGAAATTT pLKO_005 3999 3UTR 100% 15.000 7.500 Y PCDH11Y n/a
4 TRCN0000056357 CCCATCCATTGACATAAGATA pLKO.1 1809 CDS 100% 5.625 2.813 Y PCDH11X n/a
5 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 4807 3UTR 100% 4.950 2.475 Y CFLAR n/a
6 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 4807 3UTR 100% 4.950 2.475 Y C19orf31 n/a
7 TRCN0000056287 CCAAGGGATGAGCATTGCTTT pLKO.1 1054 CDS 100% 4.950 2.475 Y PCDH11Y n/a
8 TRCN0000056285 CCTGTCAATGACACAGTTGTT pLKO.1 1840 CDS 100% 4.950 2.475 Y PCDH11Y n/a
9 TRCN0000056283 CCTTCCAAATTCAGCCTGAAA pLKO.1 3593 CDS 100% 4.950 2.475 Y PCDH11Y n/a
10 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 4423 3UTR 100% 4.950 2.475 Y ERAP2 n/a
11 TRCN0000056356 GCAGATGATAATGATGAAGAA pLKO.1 3339 CDS 100% 4.950 2.475 Y PCDH11X n/a
12 TRCN0000056284 GCCAGTATTCAGTAATCAGTT pLKO.1 1980 CDS 100% 4.950 2.475 Y PCDH11Y n/a
13 TRCN0000424308 GTGAGCTGAACTAGCCAAACT pLKO_005 4222 3UTR 100% 4.950 2.475 Y PCDH11Y n/a
14 TRCN0000138140 GATTGAGACCATCCTGGCTAA pLKO.1 4478 3UTR 100% 4.050 2.025 Y LOC441087 n/a
15 TRCN0000418182 TGCAATTACTTGCCCTGTCTG pLKO_005 4161 3UTR 100% 4.050 2.025 Y PCDH11Y n/a
16 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4424 3UTR 100% 13.200 6.600 Y LIAS n/a
17 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 4974 3UTR 100% 10.800 5.400 Y SMIM11A n/a
18 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 4805 3UTR 100% 4.950 2.475 Y ERN2 n/a
19 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 4805 3UTR 100% 4.950 2.475 Y P3H4 n/a
20 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 4805 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011530915.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.