Transcript: Human XM_011534897.2

PREDICTED: Homo sapiens chondromodulin (CNMD), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CNMD (11061)
Length:
1457
CDS:
29..1126

Additional Resources:

NCBI RefSeq record:
XM_011534897.2
NBCI Gene record:
CNMD (11061)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011534897.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372770 ACACTCAACCTGAGCGGTTAT pLKO_005 1229 3UTR 100% 10.800 15.120 N CNMD n/a
2 TRCN0000150160 GCTTAAACCAACCTATCCAAA pLKO.1 709 CDS 100% 4.950 6.930 N CNMD n/a
3 TRCN0000127777 GAAGTGCTACATTAAAGCGCA pLKO.1 496 CDS 100% 0.660 0.924 N CNMD n/a
4 TRCN0000179187 GCAAGATCATGCCAGTCAAAT pLKO.1 582 CDS 100% 13.200 10.560 N CNMD n/a
5 TRCN0000147183 CTTCTTGAGTTCTAAGGTGTT pLKO.1 658 CDS 100% 4.050 3.240 N CNMD n/a
6 TRCN0000372829 GGCGCTGGAAGACTGAATAAT pLKO_005 830 CDS 100% 15.000 10.500 N CNMD n/a
7 TRCN0000372771 TATTACCCATGGCCTTATAAT pLKO_005 1028 CDS 100% 15.000 10.500 N CNMD n/a
8 TRCN0000378897 ATTACACCATGAGTATCAATG pLKO_005 336 CDS 100% 10.800 7.560 N CNMD n/a
9 TRCN0000183686 GCTGGAAGACTGAATAATGAA pLKO.1 833 CDS 100% 5.625 3.938 N CNMD n/a
10 TRCN0000146907 CTACATTAAAGCGCAAGTGAA pLKO.1 502 CDS 100% 4.950 3.465 N CNMD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011534897.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07740 pDONR223 100% 91% 91.2% None (many diffs) n/a
2 ccsbBroad304_07740 pLX_304 0% 91% 91.2% V5 (many diffs) n/a
3 TRCN0000473166 CACCTTTTGCCTATATAACCACGC pLX_317 41.6% 91% 91.2% V5 (many diffs) n/a
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