Construct: ORF ccsbBroadEn_07740
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016305.1_s300c1, BRDN0000385865
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CNMD (11061)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11061 | CNMD | chondromodulin | NM_001011705.2 | 99.7% | 100% | 990G>A;999G>A |
| 2 | human | 11061 | CNMD | chondromodulin | NM_007015.3 | 99.5% | 99.7% | 790_792delCAG;993G>A;1002G>A |
| 3 | human | 11061 | CNMD | chondromodulin | XM_011534898.2 | 91.3% | 91.4% | (many diffs) |
| 4 | human | 11061 | CNMD | chondromodulin | XM_011534897.2 | 91% | 91.2% | (many diffs) |
| 5 | human | 11061 | CNMD | chondromodulin | XM_011534900.2 | 81.5% | 81.7% | (many diffs) |
| 6 | human | 11061 | CNMD | chondromodulin | XM_011534899.2 | 80.6% | 80.8% | (many diffs) |
| 7 | mouse | 16840 | Cnmd | chondromodulin | XM_006518664.3 | 85.7% | 88.6% | (many diffs) |
| 8 | mouse | 16840 | Cnmd | chondromodulin | NM_010701.3 | 85.4% | 88.3% | (many diffs) |
| 9 | mouse | 16840 | Cnmd | chondromodulin | XM_006518663.3 | 84.7% | 87.5% | (many diffs) |
| 10 | mouse | 16840 | Cnmd | chondromodulin | NM_001310655.1 | 84.4% | 87.3% | (many diffs) |
| 11 | mouse | 16840 | Cnmd | chondromodulin | XM_006518665.3 | 71.9% | 74.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1065
- ORF length:
- 999
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC AGAGAACTCC GACAAAGTTC CCATTGCCCT GGTGGGACCT GATGACGTGG 121 AATTCTGCAG CCCCCCGGCG TACGCTACGC TGACGGTGAA GCCCTCCAGC CCCGCGCGGC 181 TGCTCAAGGT GGGAGCCGTG GTCCTCATTT CGGGAGCTGT GCTGCTGCTC TTTGGGGCCA 241 TCGGGGCCTT CTACTTCTGG AAGGGGAGCG ACAGTCACAT TTACAATGTC CATTACACCA 301 TGAGTATCAA TGGGAAATTA CAAGATGGGT CAATGGAAAT AGACGCTGGG AACAACTTGG 361 AGACCTTTAA AATGGGAAGT GGAGCTGAAG AAGCAATTGC AGTTAATGAT TTCCAGAATG 421 GCATCACAGG AATTCGTTTT GCTGGAGGAG AGAAGTGCTA CATTAAAGCG CAAGTGAAGG 481 CTCGTATTCC TGAGGTGGGC GCCGTGACCA AACAGAGCAT CTCCTCCAAA CTGGAAGGCA 541 AGATCATGCC AGTCAAATAT GAAGAAAATT CTCTTATCTG GGTGGCTGTA GATCAGCCTG 601 TGAAGGACAA CAGCTTCTTG AGTTCTAAGG TGTTAGAACT CTGCGGTGAC CTTCCTATTT 661 TCTGGCTTAA ACCAACCTAT CCAAAAGAAA TCCAGAGGGA AAGAAGAGAA GTGGTAAGAA 721 AAATTGTTCC AACTACCACA AAAAGACCAC ACAGTGGACC ACGGAGCAAC CCAGGCGCTG 781 GAAGACTGAA TAATGAAACC AGACCCAGTG TTCAAGAGGA CTCACAAGCC TTCAATCCTG 841 ATAATCCTTA TCATCAGGAA GGGGAAAGCA TGACATTCGA CCCTAGACTG GATCACGAAG 901 GAATCTGTTG TATAGAATGT AGGCGGAGCT ACACCCACTG CCAGAAGATC TGTGAACCCC 961 TGGGGGGCTA TTACCCATGG CCTTATAATT ATCAAGGCTG CCGTTCGGCC TGCAGAGTCA 1021 TCATGCCATG TAGCTGGTGG GTGGCCCGTA TCTTAGGCAT GGTATGCCCA ACTTTCTTGT 1081 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c