Construct: ORF TRCN0000473166

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016305.1_s317c1
Derived from:
ccsbBroadEn_07740
DNA Barcode:
CACCTTTTGCCTATATAACCACGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNMD (11061)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473166
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11061 CNMD chondromodulin NM_001011705.2 99.7% 100% 990G>A;999G>A
2 human 11061 CNMD chondromodulin NM_007015.3 99.5% 99.7% 790_792delCAG;993G>A;1002G>A
3 human 11061 CNMD chondromodulin XM_011534898.2 91.3% 91.4% (many diffs)
4 human 11061 CNMD chondromodulin XM_011534897.2 91% 91.2% (many diffs)
5 human 11061 CNMD chondromodulin XM_011534900.2 81.5% 81.7% (many diffs)
6 human 11061 CNMD chondromodulin XM_011534899.2 80.6% 80.8% (many diffs)
7 mouse 16840 Cnmd chondromodulin XM_006518664.3 85.7% 88.6% (many diffs)
8 mouse 16840 Cnmd chondromodulin NM_010701.3 85.4% 88.3% (many diffs)
9 mouse 16840 Cnmd chondromodulin XM_006518663.3 84.7% 87.5% (many diffs)
10 mouse 16840 Cnmd chondromodulin NM_001310655.1 84.4% 87.3% (many diffs)
11 mouse 16840 Cnmd chondromodulin XM_006518665.3 71.9% 74.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1065
ORF length:
999
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac agagaactcc gacaaagttc ccattgccct ggtgggacct gatgacgtgg
121aattctgcag ccccccggcg tacgctacgc tgacggtgaa gccctccagc cccgcgcggc
181tgctcaaggt gggagccgtg gtcctcattt cgggagctgt gctgctgctc tttggggcca
241tcggggcctt ctacttctgg aaggggagcg acagtcacat ttacaatgtc cattacacca
301tgagtatcaa tgggaaatta caagatgggt caatggaaat agacgctggg aacaacttgg
361agacctttaa aatgggaagt ggagctgaag aagcaattgc agttaatgat ttccagaatg
421gcatcacagg aattcgtttt gctggaggag agaagtgcta cattaaagcg caagtgaagg
481ctcgtattcc tgaggtgggc gccgtgacca aacagagcat ctcctccaaa ctggaaggca
541agatcatgcc agtcaaatat gaagaaaatt ctcttatctg ggtggctgta gatcagcctg
601tgaaggacaa cagcttcttg agttctaagg tgttagaact ctgcggtgac cTTCCTATTT
661TCTGGCTTAA ACCAACCTAT CCAAAAGAAA TCCAGAGGGA AAGAAGAGAA GTGGTAAGAA
721AAATTGTTCC AACTACCACA AAAAGACCAC ACAGTGGACC ACGGAGCAAC CCAGGCGCTG
781GAAGACTGAA TAATGAAACC AGACCCAGTG TTCAAGAGGA CTCACAAGCC TTCAATCCTG
841ATAATCCTTA TCATCAGGAA GGGGAAAGCA TGACATTCGA CCCTAGACTG GATCACGAAG
901GAATCTGTTG TATAGAATGT AGGCGGAGCT ACACCCACTG CCAGAAGATC TGTGAACCCC
961TGGGGGGCTA TTACCCATGG CCTTATAATT ATCAAGGCTG CCGTTCGGCC TGCAGAGTCA
1021TCATGCCATG TAGCTGGTGG GTGGCCCGTA TCTTAGGCAT GGTATGCCCA ACTTTCTTGT
1081ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1141AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1201GAAAGGACGA CACCTTTTGC CTATATAACC ACGCACGCGT TAAGTCgaca atcaacctct
1261ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)

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