Transcript: Human XM_011535041.2

PREDICTED: Homo sapiens integrator complex subunit 6 (INTS6), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
INTS6 (26512)
Length:
6379
CDS:
1267..3288

Additional Resources:

NCBI RefSeq record:
XM_011535041.2
NBCI Gene record:
INTS6 (26512)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011535041.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230239 ACCACTAATGATTCGATAATA pLKO_005 2737 CDS 100% 15.000 21.000 N INTS6 n/a
2 TRCN0000001264 GCCACGAAGGTTGCATACATT pLKO.1 2448 CDS 100% 5.625 7.875 N INTS6 n/a
3 TRCN0000218694 AGCTGTCACAAACTCATATAT pLKO_005 1411 CDS 100% 15.000 10.500 N INTS6 n/a
4 TRCN0000230240 ATAGAATGTGGCCACTTATTT pLKO_005 3295 3UTR 100% 15.000 10.500 N INTS6 n/a
5 TRCN0000257101 CCAATCAGATCAACCATATTA pLKO_005 3257 CDS 100% 15.000 10.500 N INTS6 n/a
6 TRCN0000230238 CTTCACCACTGACTCAATTTA pLKO_005 1616 CDS 100% 15.000 10.500 N INTS6 n/a
7 TRCN0000111164 CCAATCCCTAAGGACAGCTTT pLKO.1 1075 5UTR 100% 4.950 3.465 N Ints6 n/a
8 TRCN0000001263 GCCGTTCATATTCTGTGTGTT pLKO.1 1238 5UTR 100% 4.950 3.465 N INTS6 n/a
9 TRCN0000001265 CCTTACAATTATCCAGTCCTT pLKO.1 1771 CDS 100% 2.640 1.848 N INTS6 n/a
10 TRCN0000001262 CGTGTCAATTTCCCTCAGGTT pLKO.1 3562 3UTR 100% 2.640 1.848 N INTS6 n/a
11 TRCN0000001266 CCAGCATCTTCACTCAACAAA pLKO.1 2989 CDS 100% 5.625 3.375 N INTS6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011535041.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02962 pDONR223 100% 75.8% 75.8% None 0_1ins642 n/a
2 ccsbBroad304_02962 pLX_304 0% 75.8% 75.8% V5 0_1ins642 n/a
3 TRCN0000470451 AATGGACCGCACAGCGCCGTTTAT pLX_317 15.7% 75.8% 75.8% V5 0_1ins642 n/a
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