Transcript: Human XM_011536601.3

PREDICTED: Homo sapiens dicer 1, ribonuclease III (DICER1), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DICER1 (23405)
Length:
10482
CDS:
444..6212

Additional Resources:

NCBI RefSeq record:
XM_011536601.3
NBCI Gene record:
DICER1 (23405)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011536601.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000051262 GCTGGCTGTAAAGTACGACTA pLKO.1 5684 CDS 100% 4.050 5.670 N DICER1 n/a
2 TRCN0000290488 GCTGGCTGTAAAGTACGACTA pLKO_005 5684 CDS 100% 4.050 5.670 N DICER1 n/a
3 TRCN0000051261 GCCAAGGAAATCAGCTAAATT pLKO.1 4033 CDS 100% 15.000 10.500 N DICER1 n/a
4 TRCN0000290486 GCCAAGGAAATCAGCTAAATT pLKO_005 4033 CDS 100% 15.000 10.500 N DICER1 n/a
5 TRCN0000051260 CCACACATCTTCAAGACTTAA pLKO.1 3416 CDS 100% 13.200 9.240 N DICER1 n/a
6 TRCN0000290426 CCACACATCTTCAAGACTTAA pLKO_005 3416 CDS 100% 13.200 9.240 N DICER1 n/a
7 TRCN0000051258 GCTCGAAATCTTACGCAAATA pLKO.1 1583 CDS 100% 13.200 9.240 N DICER1 n/a
8 TRCN0000290489 GCTCGAAATCTTACGCAAATA pLKO_005 1583 CDS 100% 13.200 9.240 N DICER1 n/a
9 TRCN0000051259 CGGGAGAATTTCAACAGCCAA pLKO.1 5262 CDS 100% 2.640 1.848 N DICER1 n/a
10 TRCN0000290490 CGGGAGAATTTCAACAGCCAA pLKO_005 5262 CDS 100% 2.640 1.848 N DICER1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011536601.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02759 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02759 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000491528 CTTAGGGCAATCCTTAGGTGAATG pLX_317 4.7% 100% 100% V5 n/a
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