Transcript: Human XM_011536846.2

PREDICTED: Homo sapiens G protein subunit gamma 2 (GNG2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GNG2 (54331)
Length:
3424
CDS:
96..311

Additional Resources:

NCBI RefSeq record:
XM_011536846.2
NBCI Gene record:
GNG2 (54331)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011536846.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000142368 GATTTGATGGCCTACTGTGAA pLKO.1 201 CDS 100% 4.950 6.930 N GNG2 n/a
2 TRCN0000143416 CAATATCGACAGGATAAAGGT pLKO.1 164 CDS 100% 3.000 4.200 N GNG2 n/a
3 TRCN0000139511 CCGATCCACATCCTGACTTAA pLKO.1 483 3UTR 100% 13.200 9.240 N GNG2 n/a
4 TRCN0000143698 GCTTAAGATGGAAGCCAATAT pLKO.1 149 CDS 100% 13.200 9.240 N GNG2 n/a
5 TRCN0000141356 CCGTTTAGGGAGAAGAAGTTT pLKO.1 273 CDS 100% 5.625 3.938 N GNG2 n/a
6 TRCN0000143887 CCTCCTAGTTAATAGTGGTAT pLKO.1 1237 3UTR 100% 4.950 3.465 N GNG2 n/a
7 TRCN0000142146 GAAGCCAATATCGACAGGATA pLKO.1 159 CDS 100% 4.950 3.465 N GNG2 n/a
8 TRCN0000037054 CGACAGGATAAAGGTGTCCAA pLKO.1 170 CDS 100% 2.640 1.848 N Gng2 n/a
9 TRCN0000139476 CGACAGGATAAAGGTGTCCAA pLKO.1 170 CDS 100% 2.640 1.848 N GNG2 n/a
10 TRCN0000326411 CGACAGGATAAAGGTGTCCAA pLKO_005 170 CDS 100% 2.640 1.848 N Gng2 n/a
11 TRCN0000139802 CTACTGTGAAGCACATGCCAA pLKO.1 212 CDS 100% 2.640 1.848 N GNG2 n/a
12 TRCN0000140087 GAAGCTGGTAGAGCAGCTTAA pLKO.1 134 CDS 100% 1.080 0.756 N GNG2 n/a
13 TRCN0000141324 CAGCTTAAGATGGAAGCCAAT pLKO.1 147 CDS 100% 4.050 2.430 N GNG2 n/a
14 TRCN0000140458 GCAGCTTAAGATGGAAGCCAA pLKO.1 146 CDS 100% 2.640 1.584 N GNG2 n/a
15 TRCN0000037058 CAAGCCAGGAAGCTGGTAGAA pLKO.1 126 CDS 100% 4.950 3.465 N Gng2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011536846.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03408 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03408 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000466693 GGACAATCAATGTACAAGGCACCC pLX_317 100% 100% 100% V5 n/a
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