Transcript: Human XM_011542012.2

PREDICTED: Homo sapiens NBPF member 6 (NBPF6), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NBPF6 (653149)
Length:
4853
CDS:
1618..3588

Additional Resources:

NCBI RefSeq record:
XM_011542012.2
NBCI Gene record:
NBPF6 (653149)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542012.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000337216 GAGGAGCTCAGGCAGTATAAA pLKO_005 1939 CDS 100% 15.000 7.500 Y NBPF6 n/a
2 TRCN0000337150 TCCCTCCTACCACCCTTATTG pLKO_005 2796 CDS 100% 13.200 6.600 Y NBPF6 n/a
3 TRCN0000337149 ATGAGGATGAAGACGACAAAG pLKO_005 2183 CDS 100% 10.800 5.400 Y NBPF6 n/a
4 TRCN0000415417 GTTTAAGTCCAAACACAATAC pLKO_005 3648 3UTR 100% 10.800 5.400 Y NBPF4 n/a
5 TRCN0000167427 GATGAACATCCTAGAAATCAA pLKO.1 1713 CDS 100% 5.625 2.813 Y NBPF4 n/a
6 TRCN0000420438 ACAGCAAAGCAAGTTTAAGTC pLKO_005 3636 3UTR 100% 4.950 2.475 Y NBPF4 n/a
7 TRCN0000167347 CACTTGTTCAAATAGTCACAA pLKO.1 2304 CDS 100% 4.950 2.475 Y NBPF4 n/a
8 TRCN0000146474 CCTGAGTTTCATAGGAGGTAA pLKO.1 3964 3UTR 100% 4.950 2.475 Y NBPF15 n/a
9 TRCN0000163889 CCTGAGTTTCATAGGAGGTAA pLKO.1 3964 3UTR 100% 4.950 2.475 Y NBPF14 n/a
10 TRCN0000167380 GAAATACAAGTGTGAAGAGTA pLKO.1 1842 CDS 100% 4.950 2.475 Y NBPF4 n/a
11 TRCN0000168431 GCAGAGATGAACATCCTAGAA pLKO.1 1708 CDS 100% 4.950 2.475 Y NBPF4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542012.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10609 pDONR223 100% 45.3% 43.6% None (many diffs) n/a
2 ccsbBroad304_10609 pLX_304 0% 45.3% 43.6% V5 (many diffs) n/a
3 TRCN0000491729 GCCACCGCCCTTCATCTCTGACCC pLX_317 44.9% 45.3% 43.6% V5 (many diffs) n/a
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