Transcript: Human XM_011542556.2

PREDICTED: Homo sapiens Yes associated protein 1 (YAP1), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
YAP1 (10413)
Length:
4310
CDS:
515..1507

Additional Resources:

NCBI RefSeq record:
XM_011542556.2
NBCI Gene record:
YAP1 (10413)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542556.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107267 CAGGTGATACTATCAACCAAA pLKO.1 1266 CDS 100% 4.950 6.930 N YAP1 n/a
2 TRCN0000310615 CAGGTGATACTATCAACCAAA pLKO_005 1266 CDS 100% 4.950 6.930 N YAP1 n/a
3 TRCN0000107268 GACCAATAGCTCAGATCCTTT pLKO.1 1126 CDS 100% 4.950 6.930 N YAP1 n/a
4 TRCN0000300281 GACCAATAGCTCAGATCCTTT pLKO_005 1126 CDS 100% 4.950 6.930 N YAP1 n/a
5 TRCN0000107269 CGACCAATAGCTCAGATCCTT pLKO.1 1125 CDS 100% 3.000 4.200 N YAP1 n/a
6 TRCN0000095865 CCACCAAGCTAGATAAAGAAA pLKO.1 1467 CDS 100% 5.625 3.938 N Yap1 n/a
7 TRCN0000107266 GCCACCAAGCTAGATAAAGAA pLKO.1 1466 CDS 100% 5.625 3.938 N YAP1 n/a
8 TRCN0000300325 GCCACCAAGCTAGATAAAGAA pLKO_005 1466 CDS 100% 5.625 3.938 N YAP1 n/a
9 TRCN0000107265 CCCAGTTAAATGTTCACCAAT pLKO.1 1821 3UTR 100% 4.950 3.465 N YAP1 n/a
10 TRCN0000300282 CCCAGTTAAATGTTCACCAAT pLKO_005 1821 3UTR 100% 4.950 3.465 N YAP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542556.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07601 pDONR223 100% 64% 63.9% None (many diffs) n/a
2 ccsbBroad304_07601 pLX_304 43.6% 64% 63.9% V5 (many diffs) n/a
3 TRCN0000477457 ACATGTTCCTATACTGTTACCAAT pLX_317 19.9% 64% 63.9% V5 (many diffs) n/a
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