Transcript: Human XM_011542910.3

PREDICTED: Homo sapiens single-pass membrane protein with coiled-coil domains 4 (SMCO4), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SMCO4 (56935)
Length:
3577
CDS:
2604..3179

Additional Resources:

NCBI RefSeq record:
XM_011542910.3
NBCI Gene record:
SMCO4 (56935)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542910.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000168176 CTTGATCGTGGTGTTTGTGTA pLKO.1 2988 CDS 100% 4.950 6.930 N SMCO4 n/a
2 TRCN0000141048 CGATAAGTAGCTCCACCTGAA pLKO.1 3358 3UTR 100% 4.050 3.240 N SMCO4 n/a
3 TRCN0000297884 CGATAAGTAGCTCCACCTGAA pLKO_005 3358 3UTR 100% 4.050 3.240 N SMCO4 n/a
4 TRCN0000167108 CTCTGGTCTTTGACTTGATTA pLKO.1 3167 CDS 100% 13.200 9.240 N SMCO4 n/a
5 TRCN0000280777 CTCTGGTCTTTGACTTGATTA pLKO_005 3167 CDS 100% 13.200 9.240 N SMCO4 n/a
6 TRCN0000168096 CTCACCTCATTCCCATTGTTT pLKO.1 3421 3UTR 100% 5.625 3.938 N SMCO4 n/a
7 TRCN0000280779 CTCACCTCATTCCCATTGTTT pLKO_005 3421 3UTR 100% 5.625 3.938 N SMCO4 n/a
8 TRCN0000167335 CATTCCCATTGTTTGGATCAT pLKO.1 3428 3UTR 100% 4.950 3.465 N SMCO4 n/a
9 TRCN0000168234 CATACACCTTATGGTCCACTT pLKO.1 3242 3UTR 100% 4.050 2.835 N SMCO4 n/a
10 TRCN0000122633 GCAGATCACTACAGTGGTGCT pLKO.1 2943 CDS 100% 2.160 1.512 N SMCO4 n/a
11 TRCN0000280706 GCAGATCACTACAGTGGTGCT pLKO_005 2943 CDS 100% 2.160 1.512 N SMCO4 n/a
12 TRCN0000257892 GAGACCTCCAAGGACAAGAAG pLKO_005 2890 CDS 100% 4.950 2.970 N Smco4 n/a
13 TRCN0000122362 CAAGGACAAGAAGGAGCGGAA pLKO.1 2898 CDS 100% 2.160 1.296 N SMCO4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542910.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08668 pDONR223 100% 30.7% 2.1% None 1_256del;358G>A;434_573del n/a
2 ccsbBroad304_08668 pLX_304 0% 30.7% 2.1% V5 1_256del;358G>A;434_573del n/a
3 TRCN0000466275 GACAACTTTTGTCCTCCGTTCTGC pLX_317 100% 30.7% 2.1% V5 1_256del;358G>A;434_573del n/a
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