Transcript: Human XM_011543499.2

PREDICTED: Homo sapiens ADP ribosylation factor like GTPase 15 (ARL15), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARL15 (54622)
Length:
3376
CDS:
17..757

Additional Resources:

NCBI RefSeq record:
XM_011543499.2
NBCI Gene record:
ARL15 (54622)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011543499.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000105927 CGCTACTACCAAGGATCTCAA pLKO.1 425 CDS 100% 4.950 6.930 N Arl15 n/a
2 TRCN0000062315 GACCAGAATATGACCTGGTTT pLKO.1 231 CDS 100% 0.495 0.693 N ARL15 n/a
3 TRCN0000380591 GGTTTGGGAGTGGAGTATTAT pLKO_005 1139 3UTR 100% 15.000 12.000 N ARL15 n/a
4 TRCN0000062316 GCCTCTTCAGAGGATGATTTA pLKO.1 470 CDS 100% 13.200 10.560 N ARL15 n/a
5 TRCN0000062317 CCGGAAATACTGGAGCCGCTA pLKO.1 409 CDS 100% 0.720 0.576 N ARL15 n/a
6 TRCN0000381234 GCTTCTCTCAGCTGATTAATT pLKO_005 699 CDS 100% 15.000 10.500 N ARL15 n/a
7 TRCN0000380352 TTCTCTGTTTACCACTAATTA pLKO_005 974 3UTR 100% 15.000 10.500 N ARL15 n/a
8 TRCN0000379669 ACCACCTGCACGACCAGAATA pLKO_005 220 CDS 100% 13.200 9.240 N ARL15 n/a
9 TRCN0000380292 GGCTGATAACATCCGGAAATA pLKO_005 397 CDS 100% 13.200 9.240 N ARL15 n/a
10 TRCN0000381190 GACCATGAAGCTGTAAGAATG pLKO_005 734 CDS 100% 10.800 7.560 N ARL15 n/a
11 TRCN0000062313 CGCTCAGTACAAGAGATCAAA pLKO.1 590 CDS 100% 5.625 3.938 N ARL15 n/a
12 TRCN0000062314 GCATCCACAGTTATGCACTTT pLKO.1 526 CDS 100% 4.950 3.465 N ARL15 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011543499.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08397 pDONR223 100% 78.5% 74.4% None (many diffs) n/a
2 ccsbBroad304_08397 pLX_304 0% 78.5% 74.4% V5 (many diffs) n/a
3 TRCN0000474923 TTTTATCTCCATCATCTCCCATAT pLX_317 54.7% 78.5% 74.4% V5 (many diffs) n/a
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