Transcript: Human XM_011543680.2

PREDICTED: Homo sapiens UTP15 small subunit processome component (UTP15), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UTP15 (84135)
Length:
5347
CDS:
517..2073

Additional Resources:

NCBI RefSeq record:
XM_011543680.2
NBCI Gene record:
UTP15 (84135)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011543680.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000146697 CAATAAAGACACCCGAGATTA pLKO.1 1673 CDS 100% 13.200 10.560 N UTP15 n/a
2 TRCN0000416616 GAGACTCTCTTTGATACATTA pLKO_005 2142 3UTR 100% 13.200 9.240 N UTP15 n/a
3 TRCN0000427469 GAGTGTTCTGTATCAACATTT pLKO_005 2352 3UTR 100% 13.200 9.240 N UTP15 n/a
4 TRCN0000150190 GCACATGAAGATGAGACAATA pLKO.1 1408 CDS 100% 13.200 9.240 N UTP15 n/a
5 TRCN0000129973 GAACACACATCTGATGGATTT pLKO.1 2026 CDS 100% 10.800 7.560 N UTP15 n/a
6 TRCN0000130978 CATGAAGCAACGGGATGACAT pLKO.1 1548 CDS 100% 4.950 3.465 N UTP15 n/a
7 TRCN0000146338 CCAATGGAATACTGAGTGTTA pLKO.1 1442 CDS 100% 4.950 3.465 N UTP15 n/a
8 TRCN0000149092 GTGTTGGAACACACATCTGAT pLKO.1 2020 CDS 100% 4.950 3.465 N UTP15 n/a
9 TRCN0000149983 CATGTTTATGTCTAAGCAGCT pLKO.1 1271 CDS 100% 2.160 1.512 N UTP15 n/a
10 TRCN0000148364 CCTAGAATTGTATGACAGGGA pLKO.1 1596 CDS 100% 0.660 0.462 N UTP15 n/a
11 TRCN0000150001 CCGTGACATGTTTATGTCTAA pLKO.1 1265 CDS 100% 0.495 0.347 N UTP15 n/a
12 TRCN0000146471 CTTCTGTGTTGGAACACACAT pLKO.1 2015 CDS 100% 0.495 0.347 N UTP15 n/a
13 TRCN0000126745 GCCTGCATATCGAACCTTTAT pLKO.1 1512 CDS 100% 13.200 6.600 Y Utp15 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011543680.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12781 pDONR223 100% 54.9% 55% None 1_699del;1212A>C n/a
2 ccsbBroad304_12781 pLX_304 0% 54.9% 55% V5 1_699del;1212A>C n/a
3 TRCN0000491306 ACGATACGAACAACTTCACTAGGC pLX_317 31.5% 54.9% 55% V5 1_699del;1212A>C n/a
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