Transcript: Human XM_011544883.2

PREDICTED: Homo sapiens fibronectin leucine rich transmembrane protein 1 (FLRT1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FLRT1 (23769)
Length:
11203
CDS:
182..2206

Additional Resources:

NCBI RefSeq record:
XM_011544883.2
NBCI Gene record:
FLRT1 (23769)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011544883.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000156853 GTACGTGGTCCACACTATCTT pLKO.1 2077 CDS 100% 5.625 7.875 N FLRT1 n/a
2 TRCN0000154081 CTATACGAGAATGACCTGGAT pLKO.1 518 CDS 100% 2.640 2.112 N FLRT1 n/a
3 TRCN0000156637 GACAACAATGTGCGCACCATT pLKO.1 587 CDS 100% 4.950 3.465 N FLRT1 n/a
4 TRCN0000153277 GCAGAACAACCAGATCAACAA pLKO.1 445 CDS 100% 4.950 3.465 N FLRT1 n/a
5 TRCN0000417976 GGTCAACGTGCAGGTCATCTA pLKO_005 496 CDS 100% 4.950 3.465 N FLRT1 n/a
6 TRCN0000436610 TGCGACAACGGCTTCATCTAC pLKO_005 359 CDS 100% 4.950 3.465 N FLRT1 n/a
7 TRCN0000157633 CTGTTTACCCTCAAGGCCAAA pLKO.1 1406 CDS 100% 4.050 2.835 N FLRT1 n/a
8 TRCN0000157695 CAACGGCTTCATCTACTGCAA pLKO.1 364 CDS 100% 2.640 1.848 N FLRT1 n/a
9 TRCN0000157321 CATCATCTGCATGGTCACCAT pLKO.1 1690 CDS 100% 2.640 1.848 N FLRT1 n/a
10 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 8744 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
11 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 4338 3UTR 100% 4.950 2.475 Y ERAP2 n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4339 3UTR 100% 13.200 6.600 Y LIAS n/a
13 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 8851 3UTR 100% 5.625 2.813 Y KLHL30 n/a
14 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 8851 3UTR 100% 5.625 2.813 Y EID2B n/a
15 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 4503 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011544883.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07931 pDONR223 100% 99.9% 100% None 714C>T;1893A>G n/a
2 ccsbBroad304_07931 pLX_304 0% 99.9% 100% V5 714C>T;1893A>G n/a
3 TRCN0000481508 TCCGAAAGAGCCTGGATGACGTTG pLX_317 23.7% 99.9% 100% V5 714C>T;1893A>G n/a
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