Transcript: Human XM_017000050.2

PREDICTED: Homo sapiens leucine rich repeat neuronal 2 (LRRN2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LRRN2 (10446)
Length:
4976
CDS:
2154..4295

Additional Resources:

NCBI RefSeq record:
XM_017000050.2
NBCI Gene record:
LRRN2 (10446)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017000050.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000005776 GCTGACTTTCTATAGGCAATT pLKO.1 4835 3UTR 100% 10.800 15.120 N LRRN2 n/a
2 TRCN0000424734 GTGGACTGCAATGACCTATTC pLKO_005 2310 CDS 100% 10.800 15.120 N LRRN2 n/a
3 TRCN0000005778 CCTATCACATCCTGCTATCTT pLKO.1 3766 CDS 100% 5.625 7.875 N LRRN2 n/a
4 TRCN0000427780 AGCCAGATCTGAAGGACATTT pLKO_005 4758 3UTR 100% 13.200 9.240 N LRRN2 n/a
5 TRCN0000424301 GAACCCACAGCTACAACATTA pLKO_005 3886 CDS 100% 13.200 9.240 N LRRN2 n/a
6 TRCN0000005780 CTGGTCTCCATCGACAAGTTT pLKO.1 3045 CDS 100% 5.625 3.938 N LRRN2 n/a
7 TRCN0000005779 GCCAGCCTACAGGAACTCTAT pLKO.1 2574 CDS 100% 4.950 3.465 N LRRN2 n/a
8 TRCN0000005777 GCCCAACTTGGAGATACTCAT pLKO.1 2717 CDS 100% 4.950 3.465 N LRRN2 n/a
9 TRCN0000416488 TGACAGCCGCTGGTTTGAAAT pLKO_005 2693 CDS 100% 13.200 7.920 N LRRN2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017000050.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07609 pDONR223 100% 99.8% 99.7% None 1064T>C;1476A>G;2026G>C n/a
2 ccsbBroad304_07609 pLX_304 0% 99.8% 99.7% V5 1064T>C;1476A>G;2026G>C n/a
3 TRCN0000476939 CTGGCAAGTGCACACTTCGAACAA pLX_317 16.9% 99.8% 99.7% V5 1064T>C;1476A>G;2026G>C n/a
Download CSV