Transcript: Human XM_017000864.2

PREDICTED: Homo sapiens TAR DNA binding protein (TARDBP), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TARDBP (23435)
Length:
4084
CDS:
103..1347

Additional Resources:

NCBI RefSeq record:
XM_017000864.2
NBCI Gene record:
TARDBP (23435)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017000864.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000016039 CCTAATTCTAAGCAAAGCCAA pLKO.1 634 CDS 100% 2.640 3.696 N TARDBP n/a
2 TRCN0000016041 GCAATAGACAGTTAGAAAGAA pLKO.1 899 CDS 100% 5.625 4.500 N TARDBP n/a
3 TRCN0000276307 AGATCTTAAGACTGGTCATTC pLKO_005 513 CDS 100% 10.800 7.560 N TARDBP n/a
4 TRCN0000016038 GCTCTAATTCTGGTGCAGCAA pLKO.1 1229 CDS 100% 2.640 1.848 N TARDBP n/a
5 TRCN0000282004 GCTCTAATTCTGGTGCAGCAA pLKO_005 1229 CDS 100% 2.640 1.848 N TARDBP n/a
6 TRCN0000276358 GGAAACAATCAAGGTAGTAAT pLKO_005 1000 CDS 100% 13.200 6.600 Y TARDBP n/a
7 TRCN0000276356 TCTAAACTCATGGTAAGTATA pLKO_005 1397 3UTR 100% 13.200 6.600 Y TARDBP n/a
8 TRCN0000016040 GCTTTGGCTCAAGCATGGATT pLKO.1 1301 CDS 100% 4.950 2.475 Y TARDBP n/a
9 TRCN0000285525 GCTTTGGCTCAAGCATGGATT pLKO_005 1301 CDS 100% 4.950 2.475 Y TARDBP n/a
10 TRCN0000016042 CCCATTGAAATACCATCGGAA pLKO.1 145 CDS 100% 2.640 1.320 Y TARDBP n/a
11 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3437 3UTR 100% 5.625 2.813 Y KLHL30 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3437 3UTR 100% 5.625 2.813 Y EID2B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017000864.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14085 pDONR223 100% 62.7% 62.5% None 14T>N;781_1242del n/a
2 ccsbBroad304_14085 pLX_304 0% 62.7% 62.5% V5 14T>N;781_1242del n/a
3 TRCN0000469717 TCTACAAATTAAAGCTAACCCTAA pLX_317 58.1% 62.7% 62.5% V5 14T>N;781_1242del n/a
Download CSV